RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 KNOP1Q1ED39 458 aaKnown RBP10.93□□□□□ -0.66
VPS29-208ENST00000550267 TBC1D25Q3MII6 688 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 MBLAC2Q68D91 279 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 CNNM4Q6P4Q7 775 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 NCEH1Q6PIU2 408 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 UNC13DQ70J99 1090 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 ERICH1Q86X53 443 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 AHI1Q8N157 1196 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.93□□□□□ -0.66
VPS29-208ENST00000550267 TAF4BQ92750 862 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 GOLGA1Q92805 767 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 SKA1Q96BD8 255 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 PLD4Q96BZ4 506 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 NAF1Q96HR8 494 aaKnown RBP10.93□□□□□ -0.66
VPS29-208ENST00000550267 LGMNQ99538 433 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 C7orf25Q9BPX7 421 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 DUSP16Q9BY84 665 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 BLZF1Q9H2G9 400 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 PABPC3Q9H361 631 aaKnown RBP10.93□□□□□ -0.66
VPS29-208ENST00000550267 GDF3Q9NR23 364 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 FBXL12Q9NXK8 326 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 PPP4R2Q9NY27 417 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 GGA2Q9UJY4 613 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 DYRK1BQ9Y463 629 aa10.93□□□□□ -0.66
VPS29-208ENST00000550267 MORC2Q9Y6X9 1032 aaPredicted RBP10.93□□□□□ -0.66
VPS29-208ENST00000550267 KALRNO60229 2985 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 A0A1W2PP55 124 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 YKT6O15498 198 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 RPN1P04843 607 aaKnown RBP10.92□□□□□ -0.66
VPS29-208ENST00000550267 DLDP09622 509 aaKnown RBP10.92□□□□□ -0.66
VPS29-208ENST00000550267 PABPC1P11940 636 aaKnown RBP10.92□□□□□ -0.66
VPS29-208ENST00000550267 CD38P28907 300 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 SGSHP51688 502 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 YWHAGP61981 247 aaKnown RBP eCLIP10.92□□□□□ -0.66
VPS29-208ENST00000550267 PDE4CQ08493 712 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 TRIP4Q15650 581 aaPredicted RBP10.92□□□□□ -0.66
VPS29-208ENST00000550267 C8orf34Q49A92 452 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 USP30Q70CQ3 517 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 KIAA0907Q7Z7F0 614 aaPredicted RBP10.92□□□□□ -0.66
VPS29-208ENST00000550267 FMNL3Q8IVF7 1028 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 ARHGAP18Q8N392 663 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 BEND7Q8N7W2 519 aaPredicted RBP10.92□□□□□ -0.66
VPS29-208ENST00000550267 WFDC5Q8TCV5 224 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 NDRG1Q92597 394 aaKnown RBP10.92□□□□□ -0.66
VPS29-208ENST00000550267 SEMA4CQ9C0C4 833 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 RSPH9Q9H1X1 276 aaPredicted RBP10.92□□□□□ -0.66
VPS29-208ENST00000550267 NEUROG2Q9H2A3 272 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 CUEDC2Q9H467 287 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 APOBEC3GQ9HC16 384 aaKnown RBP10.92□□□□□ -0.66
VPS29-208ENST00000550267 DMAC2Q9NW81 257 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 SUN2Q9UH99 717 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 CLCA2Q9UQC9 943 aa10.92□□□□□ -0.66
VPS29-208ENST00000550267 MID1O15344 667 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 SIN3BO75182 1162 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 ATP5BP06576 529 aaKnown RBP10.91□□□□□ -0.66
VPS29-208ENST00000550267 NEFLP07196 543 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 CKMT2P17540 419 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 POLR2EP19388 210 aaKnown RBP10.91□□□□□ -0.66
VPS29-208ENST00000550267 CD70P32970 193 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 ARRB1P49407 418 aaPredicted RBP10.91□□□□□ -0.66
VPS29-208ENST00000550267 HARS2P49590 506 aaKnown RBP10.91□□□□□ -0.66
VPS29-208ENST00000550267 NXPH1P58417 271 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 ILKQ13418 452 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 KCNJ12Q14500 433 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 ZNF394Q53GI3 561 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 C1orf220Q5T0J3 134 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 SFMBT2Q5VUG0 894 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 KDM7AQ6ZMT4 941 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 KANSL1Q7Z3B3 1105 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 PIGZQ86VD9 579 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 DHX40Q8IX18 779 aaKnown RBP10.91□□□□□ -0.66
VPS29-208ENST00000550267 CACTIN-AS1Q8N1I8 211 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 FAM181AQ8N9Y4 354 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 OR2T34Q8NGX1 318 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 RFFLQ8WZ73 363 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 TMA16Q96EY4 203 aaKnown RBP10.91□□□□□ -0.66
VPS29-208ENST00000550267 MYO19Q96H55 970 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 CLMPQ9H6B4 373 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 CYP3A43Q9HB55 503 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 CPNE5Q9HCH3 593 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 SCML1Q9UN30 329 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 PCDHB1Q9Y5F3 818 aa10.91□□□□□ -0.66
VPS29-208ENST00000550267 MYH10P35580 1976 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 TP53BP1Q12888 1972 aaPredicted RBP10.9□□□□□ -0.66
VPS29-208ENST00000550267 NUMA1Q14980 2115 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 LRRC72A6NJI9 287 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 C10orf142B7Z368 130 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 TLR4O00206 839 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 RNASEH2AO75792 299 aaKnown RBP10.9□□□□□ -0.66
VPS29-208ENST00000550267 RHDQ02161 417 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 LY6DQ14210 128 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 STK38Q15208 465 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 CST6Q15828 149 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 RAB41Q5JT25 222 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 ARHGAP40Q5TG30 622 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 RIPOR1Q6ZS17 1223 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 BHLHA9Q7RTU4 235 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 SPATS2Q86XZ4 545 aaKnown RBP10.9□□□□□ -0.66
VPS29-208ENST00000550267 SLC9A9Q8IVB4 645 aa10.9□□□□□ -0.66
VPS29-208ENST00000550267 DCBLD1Q8N8Z6 715 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms