RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 C16orf46Q6P387 395 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 TAC4Q86UU9 113 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 LRRTM3Q86VH5 581 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 HDAC11Q96DB2 347 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 PKMYT1Q99640 499 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 GPBP1L1Q9HC44 474 aaPredicted RBP18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 EMCNQ9ULC0 261 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 RPS6KL1Q9Y6S9 549 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 TTC3P53804 2025 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 BIRC5O15392 142 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 HAUS5O94927 633 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 POLBP06746 335 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 PTPN4P29074 926 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 IRX4P78413 519 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 GALNT2Q10471 571 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 KCTD11Q693B1 232 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 LONP2Q86WA8 852 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 RASSF3Q86WH2 238 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 IRGQQ8WZA9 623 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 PTCD3Q96EY7 689 aaKnown RBP18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 SNNO75324 88 aaPredicted RBP18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 CYP11A1P05108 521 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 ITGA2BP08514 1039 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 GARSP41250 739 aaKnown RBP18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 ZBTB16Q05516 673 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 NAB1Q13506 487 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 DSC3Q14574 896 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 SPANXN3Q5MJ09 141 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 MFSD14CQ5VZR4 134 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 KYAT3Q6YP21 454 aaKnown RBP18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 ZCCHC23Q6ZST2 131 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 TTC7BQ86TV6 843 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 OR10T2Q8NGX3 314 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 ACMSDQ8TDX5 336 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 CERS2Q96G23 380 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 EPAS1Q99814 870 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 MLPHQ9BV36 600 aaPredicted RBP18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 SPC25Q9HBM1 224 aa18.98■□□□□ 0.63
PRPF40B-208ENST00000548436 ADAMTS4O75173 837 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 ITGB1P05556 798 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 ASGR1P07306 291 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 SLC10A3P09131 477 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 INHBEP58166 350 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 METTL23Q86XA0 190 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 ARID3BQ8IVW6 561 aaPredicted RBP18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 SMC1BQ8NDV3 1235 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 FAM13CQ8NE31 585 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 SCAMP5Q8TAC9 235 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 RAB3IL1Q8TBN0 382 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 GBA3Q9H227 469 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 CASS4Q9NQ75 786 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 ZFATQ9P243 1243 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 VANGL2Q9ULK5 521 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 INPP5FQ9Y2H2 1132 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 BRCA2P51587 3418 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 A0A0U1RQF3 1178 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 F8W810 466 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 MYCNP04198 464 aaPredicted RBP18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 EZRP15311 586 aaKnown RBP18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 MX2P20592 715 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 CCND1P24385 295 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 LPIN1Q14693 890 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 STXBP5Q5T5C0 1151 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 N4BP2L1Q5TBK1 243 aaPredicted RBP18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 ALYREFQ86V81 257 aaKnown RBP18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 DQX1Q8TE96 717 aaKnown RBP18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 DPF3Q92784 378 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 CELF6Q96J87 481 aaKnown RBP18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 MIPEPQ99797 713 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 ADAM2Q99965 735 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 BRD8Q9H0E9 1235 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 TLE6Q9H808 572 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 LRRC40Q9H9A6 602 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 DMAP1Q9NPF5 467 aaPredicted RBP18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 KCNK4Q9NYG8 393 aa18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.97■□□□□ 0.63
PRPF40B-208ENST00000548436 M0QZQ0 153 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 SEPT4O43236 478 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 ZNF189O75820 626 aaPredicted RBP18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 KITP10721 976 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 NFKB1P19838 968 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 RAB27AP51159 221 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 ACCSLQ4AC99 568 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 FASTKD1Q53R41 847 aaKnown RBP18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 PPM1JQ5JR12 505 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 ZSCAN18Q8TBC5 510 aaPredicted RBP18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 RSPH1Q8WYR4 309 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 ZNF669Q96BR6 464 aaPredicted RBP18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 MARCOQ9UEW3 520 aaPredicted RBP18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 FCHO1O14526 889 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 HNRNPCL1O60812 293 aaKnown RBP18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 GLRA3O75311 464 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 WFS1O76024 890 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 PRKCGP05129 697 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 YY1P25490 414 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 SERPINB6P35237 376 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 GMPRP36959 345 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 FLT3LGP49771 235 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 NKX3-2P78367 333 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms