RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 MAN2A1Q16706 1144 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 INAVAQ3KP66 663 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 RAP1GAP2Q684P5 730 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 GJB7Q6PEY0 223 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 C11orf57Q6ZUT1 292 aaPredicted RBP13.56□□□□□ -0.24
RTN3-212ENST00000543123 ADAT2Q7Z6V5 191 aaKnown RBP13.56□□□□□ -0.24
RTN3-212ENST00000543123 ZDHHC17Q8IUH5 632 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 KDF1Q8NAX2 398 aaPredicted RBP13.56□□□□□ -0.24
RTN3-212ENST00000543123 C1orf216Q8TAB5 229 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 SKA1Q96BD8 255 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 SLC2A13Q96QE2 648 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 CDC6Q99741 560 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 OMDQ99983 421 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 TM7SF3Q9NS93 570 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 FBXL12Q9NXK8 326 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 RRN3Q9NYV6 651 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 CHMP5Q9NZZ3 219 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 CYTH4Q9UIA0 394 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 FZD4Q9ULV1 537 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 ERVW-1Q9UQF0 538 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 MSRB2Q9Y3D2 182 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 ITIH6Q6UXX5 1313 aa13.56□□□□□ -0.24
RTN3-212ENST00000543123 CHD6Q8TD26 2715 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 A0A1B0GVT2 93 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 BECN2A8MW95 431 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 FLRT2O43155 660 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 SIN3BO75182 1162 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 ADH1BP00325 375 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 ELAVL3Q14576 367 aaKnown RBP13.55□□□□□ -0.24
RTN3-212ENST00000543123 HLA-BQ31612 363 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 FSCBQ5H9T9 825 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 DSG4Q86SJ6 1040 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 GLRX5Q86SX6 157 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 PASD1Q8IV76 773 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 DHX40Q8IX18 779 aaKnown RBP13.55□□□□□ -0.24
RTN3-212ENST00000543123 SETD7Q8WTS6 366 aaKnown RBP13.55□□□□□ -0.24
RTN3-212ENST00000543123 BIRC7Q96CA5 298 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 MYO19Q96H55 970 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 MRGPRX3Q96LB0 322 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 CPXM1Q96SM3 734 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 TM9SF3Q9HD45 589 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 ACP6Q9NPH0 428 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 INTS6Q9UL03 887 aaKnown RBP13.55□□□□□ -0.24
RTN3-212ENST00000543123 PAXBP1Q9Y5B6 917 aa13.55□□□□□ -0.24
RTN3-212ENST00000543123 ZZEF1O43149 2961 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 SYNJ2BP-COX16A0A087WUM0 186 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 DFNA5O60443 496 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 RNASEH2AO75792 299 aaKnown RBP13.54□□□□□ -0.24
RTN3-212ENST00000543123 CSNK1EP49674 416 aaKnown RBP13.54□□□□□ -0.24
RTN3-212ENST00000543123 C9orf64Q5T6V5 341 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 KIAA0895LQ68EN5 471 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 OR6B2Q6IFH4 312 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 MMS22LQ6ZRQ5 1243 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 SND1Q7KZF4 910 aaKnown RBP eCLIP13.54□□□□□ -0.247e-9■■■□□ 15.8
RTN3-212ENST00000543123 SLC26A9Q7LBE3 791 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 RAB44Q7Z6P3 723 aaPredicted RBP13.54□□□□□ -0.24
RTN3-212ENST00000543123 IRF2BP1Q8IU81 584 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 DEFB106AQ8N104 65 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 CCAR2Q8N163 923 aaKnown RBP13.54□□□□□ -0.24
RTN3-212ENST00000543123 MSANTD4Q8NCY6 345 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 C1orf131Q8NDD1 294 aaKnown RBP13.54□□□□□ -0.24
RTN3-212ENST00000543123 OR2T34Q8NGX1 318 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 ZCCHC14Q8WYQ9 949 aaKnown RBP13.54□□□□□ -0.24
RTN3-212ENST00000543123 GATA6Q92908 595 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 IGSF8Q969P0 613 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 MYEOVQ96EZ4 313 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 CAMK1GQ96NX5 476 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 RPRD1AQ96P16 312 aaPredicted RBP13.54□□□□□ -0.24
RTN3-212ENST00000543123 ACE2Q9BYF1 805 aaPredicted RBP13.54□□□□□ -0.24
RTN3-212ENST00000543123 PDCL3Q9H2J4 239 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 CLSTN2Q9H4D0 955 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 COX16Q9P0S2 106 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 ADAMTS1Q9UHI8 967 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 XPO7Q9UIA9 1087 aaKnown RBP13.54□□□□□ -0.24
RTN3-212ENST00000543123 DNAJC12Q9UKB3 198 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 PCOLCE2Q9UKZ9 415 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 ANKRD6Q9Y2G4 727 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 FNDC3AQ9Y2H6 1198 aaKnown RBP13.54□□□□□ -0.24
RTN3-212ENST00000543123 AKAP13Q12802 2813 aa13.54□□□□□ -0.24
RTN3-212ENST00000543123 FAM47DPA6NHR8 397 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 TTC34A8MYJ7 566 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 PES1O00541 588 aaKnown RBP13.53□□□□□ -0.24
RTN3-212ENST00000543123 MID1O15344 667 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 DAB1O75553 588 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 TOP3BO95985 862 aaKnown RBP13.53□□□□□ -0.24
RTN3-212ENST00000543123 FTH1P19P0C7X4 201 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 PDGFRAP16234 1089 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 C5AR1P21730 350 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 ERCC5P28715 1186 aaPredicted RBP13.53□□□□□ -0.24
RTN3-212ENST00000543123 SLC8A1P32418 973 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 NOS2P35228 1153 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 GRK6P43250 576 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 PSMD8P48556 350 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 CCT8P50990 548 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 C21orf59P57076 290 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 RACK1P63244 317 aaKnown RBP13.53□□□□□ -0.24
RTN3-212ENST00000543123 FAM193AP78312 1265 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 NME3Q13232 169 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 EIF4EBP2Q13542 120 aaPredicted RBP13.53□□□□□ -0.24
RTN3-212ENST00000543123 TAF5Q15542 800 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms