RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 MYO19Q96H55 970 aa13.52□□□□□ -0.25
LTBR-208ENST00000541005 MRGPRX1Q96LB2 322 aa13.52□□□□□ -0.25
LTBR-208ENST00000541005 RPRD1AQ96P16 312 aaPredicted RBP13.52□□□□□ -0.25
LTBR-208ENST00000541005 FBRSQ9HAH7 460 aa13.52□□□□□ -0.25
LTBR-208ENST00000541005 BCCIPQ9P287 314 aaKnown RBP eCLIP13.52□□□□□ -0.25
LTBR-208ENST00000541005 NCDNQ9UBB6 729 aa13.52□□□□□ -0.25
LTBR-208ENST00000541005 TBC1D30Q9Y2I9 924 aa13.52□□□□□ -0.25
LTBR-208ENST00000541005 RAD54BQ9Y620 910 aa13.52□□□□□ -0.25
LTBR-208ENST00000541005 BZW2Q9Y6E2 419 aaKnown RBP13.52□□□□□ -0.25
LTBR-208ENST00000541005 FRYLO94915 3013 aa13.52□□□□□ -0.25
LTBR-208ENST00000541005 TP53BP1Q12888 1972 aaPredicted RBP13.51□□□□□ -0.25
LTBR-208ENST00000541005 DRGXA6NNA5 263 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 H0Y626 953 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 CBFA2T2O43439 604 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 CLDN11O75508 207 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 EPN2O95208 641 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 MOCS3O95396 460 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 VASPP50552 380 aaPredicted RBP13.51□□□□□ -0.25
LTBR-208ENST00000541005 IRAK1P51617 712 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 ZNF143P52747 638 aaPredicted RBP13.51□□□□□ -0.25
LTBR-208ENST00000541005 CDH4P55283 916 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 HDAC4P56524 1084 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 ATP11AP98196 1134 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 SCAPQ12770 1279 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 LPAL2Q16609 132 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 C15orf59Q2T9L4 293 aaPredicted RBP13.51□□□□□ -0.25
LTBR-208ENST00000541005 PMS2CLQ68D20 193 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 PLEKHA7Q6IQ23 1121 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 WDR59Q6PJI9 974 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 PHLDB2Q86SQ0 1253 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 C14orf80Q86SX3 495 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 METTL3Q86U44 580 aaKnown RBP13.51□□□□□ -0.25
LTBR-208ENST00000541005 CIR1Q86X95 450 aaPredicted RBP13.51□□□□□ -0.25
LTBR-208ENST00000541005 FAM131BQ86XD5 332 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 GPR161Q8N6U8 529 aaKnown RBP13.51□□□□□ -0.25
LTBR-208ENST00000541005 CYB5D2Q8WUJ1 264 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 NTAN1Q96AB6 310 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 SPACA7Q96KW9 195 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 DUSP15Q9H1R2 295 aaPredicted RBP13.51□□□□□ -0.25
LTBR-208ENST00000541005 PLA2G4CQ9UP65 541 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 LUC7L2Q9Y383 392 aaKnown RBP13.51□□□□□ -0.25
LTBR-208ENST00000541005 PCDHGA5Q9Y5G8 931 aa13.51□□□□□ -0.25
LTBR-208ENST00000541005 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.51□□□□□ -0.25
LTBR-208ENST00000541005 CNOT1A5YKK6 2376 aaKnown RBP13.5□□□□□ -0.25
LTBR-208ENST00000541005 ANKRD62A6NC57 917 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 DCLK1O15075 740 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 ZBTB24O43167 697 aaPredicted RBP13.5□□□□□ -0.25
LTBR-208ENST00000541005 SYNCRIPO60506 623 aaKnown RBP13.5□□□□□ -0.25
LTBR-208ENST00000541005 RTN2O75298 545 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 ZNF217O75362 1048 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 RHOBTB1O94844 696 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 SERPING1P05155 500 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 SRPRAP08240 638 aaKnown RBP13.5□□□□□ -0.25
LTBR-208ENST00000541005 BCKDHBP21953 392 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 TGM1P22735 817 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 HNRNPH3P31942 346 aaKnown RBP13.5□□□□□ -0.25
LTBR-208ENST00000541005 GGCXP38435 758 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 RPL7AP62424 266 aaKnown RBP13.5□□□□□ -0.25
LTBR-208ENST00000541005 SULT2A1Q06520 285 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 MAMLD1Q13495 774 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 TRIM14Q14142 442 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 ELF2Q15723 593 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 CDO1Q16878 200 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 FNDC3BQ53EP0 1204 aaKnown RBP13.5□□□□□ -0.25
LTBR-208ENST00000541005 SPDYCQ5MJ68 293 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 SH3PXD2AQ5TCZ1 1133 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 MANEALQ5VSG8 457 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 SPECC1LQ69YQ0 1117 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 LRRC31Q6UY01 552 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 FAM172AQ8WUF8 416 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 ALG14Q96F25 216 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 TRIM11Q96F44 468 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 MRGPRX3Q96LB0 322 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 MCEEQ96PE7 176 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 PPP1R9BQ96SB3 815 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 HINFPQ9BQA5 517 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 CNPY3Q9BT09 278 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 MKRN2Q9H000 416 aaKnown RBP13.5□□□□□ -0.25
LTBR-208ENST00000541005 SIK2Q9H0K1 926 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 ISCUQ9H1K1 167 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 TMPRSS4Q9NRS4 437 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 PARVAQ9NVD7 372 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 PPARGC1AQ9UBK2 798 aaKnown RBP13.5□□□□□ -0.25
LTBR-208ENST00000541005 ZNF212Q9UDV6 495 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 OR51B4Q9Y5P0 310 aa13.5□□□□□ -0.25
LTBR-208ENST00000541005 KNL1Q8NG31 2342 aa13.49□□□□□ -0.25
LTBR-208ENST00000541005 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.49□□□□□ -0.25
LTBR-208ENST00000541005 E9PAM4 449 aa13.49□□□□□ -0.25
LTBR-208ENST00000541005 CCP110O43303 1012 aa13.49□□□□□ -0.25
LTBR-208ENST00000541005 IGLV3-19P01714 112 aa13.49□□□□□ -0.25
LTBR-208ENST00000541005 FTLP02792 175 aaPredicted RBP13.49□□□□□ -0.25
LTBR-208ENST00000541005 EPHX1P07099 455 aa13.49□□□□□ -0.25
LTBR-208ENST00000541005 MYBL1P10243 752 aa13.49□□□□□ -0.25
LTBR-208ENST00000541005 SKILP12757 684 aa13.49□□□□□ -0.25
LTBR-208ENST00000541005 HLA-EP13747 358 aa13.49□□□□□ -0.25
LTBR-208ENST00000541005 ADRA1BP35368 520 aa13.49□□□□□ -0.25
LTBR-208ENST00000541005 COPAP53621 1224 aa13.49□□□□□ -0.25
LTBR-208ENST00000541005 ZNF177Q13360 481 aaPredicted RBP13.49□□□□□ -0.25
LTBR-208ENST00000541005 ARL13BQ3SXY8 428 aa13.49□□□□□ -0.25
LTBR-208ENST00000541005 RAB6CQ53S08 254 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms