RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PITRM1Q5JRX3 1037 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 DHRS13Q6UX07 377 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 FMR1NBQ8N0W7 255 aaPredicted RBP14.06□□□□□ -0.16
SS18-204ENST00000539244 LMO3Q8TAP4 145 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 DQX1Q8TE96 717 aaKnown RBP14.06□□□□□ -0.16
SS18-204ENST00000539244 SAP25Q8TEE9 199 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 NT5C1BQ96P26 610 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 GTPBP4Q9BZE4 634 aaKnown RBP14.06□□□□□ -0.16
SS18-204ENST00000539244 NUCKS1Q9H1E3 243 aaKnown RBP14.06□□□□□ -0.16
SS18-204ENST00000539244 ERVW-1Q9UQF0 538 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 PCDHB4Q9Y5E5 795 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 ARID1BQ8NFD5 2236 aaPredicted RBP14.05□□□□□ -0.16
SS18-204ENST00000539244 TRIM49BA6NDI0 452 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 FAM47DPA6NHR8 397 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 PIK3R2O00459 728 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 SART1O43290 800 aaKnown RBP14.05□□□□□ -0.16
SS18-204ENST00000539244 RNASEH2AO75792 299 aaKnown RBP14.05□□□□□ -0.16
SS18-204ENST00000539244 C1SP09871 688 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 BRD2P25440 801 aaKnown RBP14.05□□□□□ -0.16
SS18-204ENST00000539244 CD38P28907 300 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 SLC8A1P32418 973 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 GCNT1Q02742 428 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 DCAF6Q58WW2 860 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 MMAAQ8IVH4 418 aaKnown RBP14.05□□□□□ -0.16
SS18-204ENST00000539244 CCDC117Q8IWD4 279 aaPredicted RBP14.05□□□□□ -0.16
SS18-204ENST00000539244 CARNMT1Q8N4J0 409 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 GANCQ8TET4 914 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 FAM131CQ96AQ9 280 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 LRIG1Q96JA1 1093 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 BBC3Q96PG8 261 aaPredicted RBP14.05□□□□□ -0.16
SS18-204ENST00000539244 FAM129BQ96TA1 746 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 OMDQ99983 421 aa14.05□□□□□ -0.16
SS18-204ENST00000539244 TTC34A8MYJ7 566 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 ENC1O14682 589 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 P4HA2O15460 535 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 LATO43561 262 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 MOCS3O95396 460 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 ADH1BP00325 375 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 GOT1P17174 413 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 C5AR1P21730 350 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 CTSOP43234 321 aaPredicted RBP14.04□□□□□ -0.16
SS18-204ENST00000539244 GPD2P43304 727 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 ADPRHP54922 357 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 ECT2LQ008S8 904 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 MEA1Q16626 185 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 MMS22LQ6ZRQ5 1243 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 SND1Q7KZF4 910 aaKnown RBP eCLIP14.04□□□□□ -0.16
SS18-204ENST00000539244 GATAD2AQ86YP4 633 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 PPM1KQ8N3J5 372 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 AADATQ8N5Z0 425 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 PTPRN2Q92932 1015 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 KAT5Q92993 513 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 CEP63Q96MT8 703 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 TRIM62Q9BVG3 475 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 MIS12Q9H081 205 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 ERVMER34-1Q9H9K5 563 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 GDF3Q9NR23 364 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 SLCO3A1Q9UIG8 710 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 CNTN6Q9UQ52 1028 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 NAALADL1Q9UQQ1 740 aa14.04□□□□□ -0.16
SS18-204ENST00000539244 WNT9AO14904 365 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 RFPL3O75679 317 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 SMC2O95347 1197 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 LDOC1O95751 146 aaPredicted RBP14.03□□□□□ -0.16
SS18-204ENST00000539244 IGLV3-25P01717 112 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 ITGAVP06756 1048 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 ABCB4P21439 1286 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 EPHA8P29322 1005 aaPredicted RBP14.03□□□□□ -0.16
SS18-204ENST00000539244 HNF1BP35680 557 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 ACADSBP45954 432 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 RXRGP48443 463 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 ACADVLP49748 655 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 VASPP50552 380 aaPredicted RBP14.03□□□□□ -0.16
SS18-204ENST00000539244 CETN1Q12798 172 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 EIF4EBP2Q13542 120 aaPredicted RBP14.03□□□□□ -0.16
SS18-204ENST00000539244 SLC12A1Q13621 1099 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 ELAVL3Q14576 367 aaKnown RBP14.03□□□□□ -0.16
SS18-204ENST00000539244 PRAMEF14Q5SWL7 426 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 SFMBT2Q5VUG0 894 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 FOXR2Q6PJQ5 311 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 TAC4Q86UU9 113 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 CFAP52Q8N1V2 620 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 OXR1Q8N573 874 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 STK32AQ8WU08 396 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 TSC1Q92574 1164 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 FAM149B1Q96BN6 582 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 NXPE2Q96DL1 559 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 CNDP2Q96KP4 475 aaKnown RBP14.03□□□□□ -0.16
SS18-204ENST00000539244 GDPD2Q9HCC8 539 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 AASDHPPTQ9NRN7 309 aa14.03□□□□□ -0.16
SS18-204ENST00000539244 XPO7Q9UIA9 1087 aaKnown RBP14.03□□□□□ -0.16
SS18-204ENST00000539244 PLK4O00444 970 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 PSMA7O14818 248 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 CALCAP01258 141 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 APOEP02649 317 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 TACR2P21452 398 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 MZF1P28698 734 aaPredicted RBP14.02□□□□□ -0.17
SS18-204ENST00000539244 DRD3P35462 400 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 PSMD8P48556 350 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 ARRB1P49407 418 aaPredicted RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms