RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 RHBDF2Q6PJF5 856 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 DENND5BQ6ZUT9 1274 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 LIMS2Q7Z4I7 341 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 MAATS1Q7Z4T9 603 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 TMC3Q7Z5M5 1100 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 PDZD3Q86UT5 571 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 C12orf40Q86WS4 652 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 C10orf67Q8IYJ2 551 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 PHTF2Q8N3S3 785 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 MINDY1Q8N5J2 469 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 SHC3Q92529 594 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 MYLPFQ96A32 169 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 C18orf8Q96DM3 657 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 FAM213AQ9BRX8 229 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 EPB41L4BQ9H329 900 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 FSCN3Q9NQT6 498 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 CTTNBP2NLQ9P2B4 639 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 TBC1D14Q9P2M4 693 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 TTC7AQ9ULT0 858 aaPredicted RBP8.57□□□□□ -1.04
NEDD8-207ENST00000533242 CPQQ9Y646 472 aa8.57□□□□□ -1.04
NEDD8-207ENST00000533242 CFAP47Q6ZTR5 3102 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 CCDC188H7C350 402 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 ARHGAP33O14559 1287 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 HCRTO43612 131 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 IVLP07476 585 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 COMTP21964 271 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 GRIK1P39086 918 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 PEX5P50542 639 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 USP46P62068 366 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 RPL6Q02878 288 aaKnown RBP8.56□□□□□ -1.04
NEDD8-207ENST00000533242 MESP2Q0VG99 397 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 SCAPQ12770 1279 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 SLC14A1Q13336 389 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 CUL1Q13616 776 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 SOWAHAQ2M3V2 549 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 PREPLQ4J6C6 727 aaPredicted RBP8.56□□□□□ -1.04
NEDD8-207ENST00000533242 SOWAHCQ53LP3 525 aaPredicted RBP8.56□□□□□ -1.04
NEDD8-207ENST00000533242 SV2AQ7L0J3 742 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 PRELID2Q8N945 189 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 BCAS4Q8TDM0 211 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 ADAMTS14Q8WXS8 1223 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 ZNF516Q92618 1163 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 C8orf48Q96LL4 319 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 RNF38Q9H0F5 515 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 CARD9Q9H257 536 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 CRTAC1Q9NQ79 661 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 RBAKQ9NYW8 714 aaPredicted RBP8.56□□□□□ -1.04
NEDD8-207ENST00000533242 CFAP97Q9P2B7 532 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 SIX4Q9UIU6 781 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 PTPRJQ12913 1337 aa8.56□□□□□ -1.04
NEDD8-207ENST00000533242 MYO18AQ92614 2054 aaKnown RBP8.56□□□□□ -1.04
NEDD8-207ENST00000533242 P4HA2O15460 535 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 ATP2C2O75185 946 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 OAS1P00973 400 aaKnown RBP8.55□□□□□ -1.04
NEDD8-207ENST00000533242 KRT19P08727 400 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 DLATP10515 647 aaKnown RBP8.55□□□□□ -1.04
NEDD8-207ENST00000533242 PYGMP11217 842 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 CYP11B1P15538 503 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 GABRG2P18507 467 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 GARTP22102 1010 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 WARSP23381 471 aaKnown RBP8.55□□□□□ -1.04
NEDD8-207ENST00000533242 BDNFP23560 247 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 HADHBP55084 474 aaKnown RBP8.55□□□□□ -1.04
NEDD8-207ENST00000533242 NOP14P78316 857 aaKnown RBP8.55□□□□□ -1.04
NEDD8-207ENST00000533242 GAD2Q05329 585 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 ZNF33AQ06730 810 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 MYO1EQ12965 1108 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 ALCAMQ13740 583 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 C19orf48Q6RUI8 117 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 PHLDB2Q86SQ0 1253 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 OTUB2Q96DC9 234 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 ATP6V1G3Q96LB4 118 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 CENPHQ9H3R5 247 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 TMBIM4Q9HC24 238 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 ZDHHC18Q9NUE0 388 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 PKD1L2Q7Z442 2459 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 E2F8A0AVK6 867 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 HOXC11O43248 304 aaPredicted RBP8.55□□□□□ -1.04
NEDD8-207ENST00000533242 NR1D1P20393 614 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 HPDP32754 393 aaPredicted RBP8.55□□□□□ -1.04
NEDD8-207ENST00000533242 PTGIRP43119 386 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 SEC24CP53992 1094 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 MCCD1P59942 119 aaPredicted RBP8.55□□□□□ -1.04
NEDD8-207ENST00000533242 PSMC1P62191 440 aaKnown RBP8.55□□□□□ -1.04
NEDD8-207ENST00000533242 CYP24A1Q07973 514 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 TRIP6Q15654 476 aaKnown RBP8.55□□□□□ -1.04
NEDD8-207ENST00000533242 DUPD1Q68J44 220 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 KRT39Q6A163 491 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 ZDHHC24Q6UX98 284 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 KDM7AQ6ZMT4 941 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 UBLCP1Q8WVY7 318 aaPredicted RBP8.55□□□□□ -1.04
NEDD8-207ENST00000533242 KBTBD7Q8WVZ9 684 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 ZSWIM1Q9BR11 485 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 HERPUD2Q9BSE4 406 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 TXLNGYQ9BZA5 131 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 SMPD4Q9NXE4 827 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 CWC15Q9P013 229 aaKnown RBP8.55□□□□□ -1.04
NEDD8-207ENST00000533242 CNOT8Q9UFF9 292 aaKnown RBP8.55□□□□□ -1.04
NEDD8-207ENST00000533242 COQ4Q9Y3A0 265 aa8.55□□□□□ -1.04
NEDD8-207ENST00000533242 PCDHB9Q9Y5E1 797 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms