RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CAMTA2O94983 1202 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 STARD3NLO95772 234 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 FGAP02671 866 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 IL1R2P27930 398 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 SLC7A1P30825 629 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 CCT4P50991 539 aaKnown RBP4.51□□□□□ -1.69
CD44-235ENST00000532339 CACNB3P54284 484 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 BCAT1P54687 386 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 PRKG1Q13976 671 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 LONRF1Q17RB8 773 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 INSCQ1MX18 579 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 C9orf50Q5SZB4 431 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 RNF220Q5VTB9 566 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 DENND2CQ68D51 928 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 XRRA1Q6P2D8 792 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 DARS2Q6PI48 645 aaKnown RBP4.51□□□□□ -1.69
CD44-235ENST00000532339 APOA5Q6Q788 366 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 MAEAQ7L5Y9 396 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 BCDIN3DQ7Z5W3 292 aaKnown RBP4.51□□□□□ -1.69
CD44-235ENST00000532339 KRT78Q8N1N4 520 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 PRSS33Q8NF86 280 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 IL31RAQ8NI17 732 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 HMCESQ96FZ2 354 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 CCDC17Q96LX7 622 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 PPP1R9BQ96SB3 815 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 MMS19Q96T76 1030 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 APOL5Q9BWW9 433 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 C22orf23Q9BZE7 217 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 SPRTNQ9H040 489 aaPredicted RBP4.51□□□□□ -1.69
CD44-235ENST00000532339 ATP6V0A4Q9HBG4 840 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 A1CFQ9NQ94 594 aaKnown RBP4.51□□□□□ -1.69
CD44-235ENST00000532339 XPNPEP3Q9NQH7 507 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 FNIP2Q9P278 1114 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 RALYQ9UKM9 306 aaKnown RBP4.51□□□□□ -1.69
CD44-235ENST00000532339 USP22Q9UPT9 525 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 DRG1Q9Y295 367 aaKnown RBP4.51□□□□□ -1.69
CD44-235ENST00000532339 ATP6V0A2Q9Y487 856 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 FLT4P35916 1363 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 USP24Q9UPU5 2620 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 MAP1BP46821 2468 aaKnown RBP4.5□□□□□ -1.69
CD44-235ENST00000532339 TCRBV5S1A1TA0A578 114 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 TMEM233B4DJY2 109 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 TCERG1O14776 1098 aaKnown RBP4.5□□□□□ -1.69
CD44-235ENST00000532339 DSCR3O14972 297 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 GCATO75600 419 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 EPHA3P29320 983 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 IL6STP40189 918 aaPredicted RBP4.5□□□□□ -1.69
CD44-235ENST00000532339 PSMC4P43686 418 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 MTHFSP49914 203 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 AK2P54819 239 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 PSG6Q00889 435 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 DHX8Q14562 1220 aaKnown RBP4.5□□□□□ -1.69
CD44-235ENST00000532339 ZNF268Q14587 947 aaPredicted RBP4.5□□□□□ -1.69
CD44-235ENST00000532339 PTCHD3Q3KNS1 767 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 TMEM63BQ5T3F8 832 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 DCAF12L1Q5VU92 463 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 CLEC4GQ6UXB4 293 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 PTCHD4Q6ZW05 846 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 DGLUCYQ7Z3D6 616 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 SRLQ86TD4 932 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 KRT73Q86Y46 540 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 PIGOQ8TEQ8 1089 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 LRTOMTQ8WZ04 291 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 ZKSCAN4Q969J2 545 aaPredicted RBP4.5□□□□□ -1.69
CD44-235ENST00000532339 SPSB4Q96A44 273 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 ASIC5Q9NY37 505 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 KLHL13Q9P2N7 655 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 SCAF8Q9UPN6 1271 aaKnown RBP4.5□□□□□ -1.69
CD44-235ENST00000532339 CDY1Q9Y6F8 540 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 FAM186AA6NE01 2351 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 CACNA1HO95180 2353 aa4.5□□□□□ -1.69
CD44-235ENST00000532339 GVINP1Q7Z2Y8 2422 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 MBD3L4A6NDZ8 208 aaPredicted RBP4.49□□□□□ -1.69
CD44-235ENST00000532339 MBD3L3A6NE82 208 aaPredicted RBP4.49□□□□□ -1.69
CD44-235ENST00000532339 IKBKBO14920 756 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 TBX3O15119 743 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 CCP110O43303 1012 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 KCNAB3O43448 404 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 FRS3O43559 492 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 SRGAP2O75044 1071 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 A1BGP04217 495 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 ATP5F1P24539 256 aaPredicted RBP4.49□□□□□ -1.69
CD44-235ENST00000532339 NR4A2P43354 598 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 PRKCZQ05513 592 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 POLD3Q15054 466 aaPredicted RBP4.49□□□□□ -1.69
CD44-235ENST00000532339 RABEP1Q15276 862 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 LURAP1LQ8IV03 231 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 NANOGP1Q8N7R0 232 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 DNAJB14Q8TBM8 379 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 HERVK_113Q902F9 699 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 CUL5Q93034 780 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 RBM17Q96I25 401 aaKnown RBP4.49□□□□□ -1.69
CD44-235ENST00000532339 CLMNQ96JQ2 1002 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 TNIP3Q96KP6 325 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 SGCZQ96LD1 299 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 MYD88Q99836 296 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 EFHD1Q9BUP0 239 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 TRIM5Q9C035 493 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 PTPRHQ9HD43 1115 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 ZCCHC17Q9NP64 241 aaKnown RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms