RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 PDK1Q15118 436 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 PDPK2PQ6A1A2 396 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 AAGABQ6PD74 315 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 CATSPER4Q7RTX7 472 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 PIGZQ86VD9 579 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 NR1H4Q96RI1 486 aaPredicted RBP19.73■□□□□ 0.75
VPS28-213ENST00000530983 CPNE1Q99829 537 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 SHCBP1LQ9BZQ2 653 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 FAM96AQ9H5X1 160 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 PRDM16Q9HAZ2 1276 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 CDHR5Q9HBB8 845 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 S100A14Q9HCY8 104 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 VTA1Q9NP79 307 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 ADARB2Q9NS39 739 aaKnown RBP19.73■□□□□ 0.75
VPS28-213ENST00000530983 COX16Q9P0S2 106 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 IGSF9Q9P2J2 1179 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 TSC2P49815 1807 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 SF3B1O75533 1304 aaKnown RBP eCLIP19.73■□□□□ 0.753e-6■■■■■ 56
VPS28-213ENST00000530983 CREB3O43889 395 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 SORBS2O94875 1100 aaKnown RBP19.73■□□□□ 0.75
VPS28-213ENST00000530983 MYL4P12829 197 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 AKAP5P24588 427 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 POLE2P56282 527 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 BTKQ06187 659 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 PPIL2Q13356 520 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 ZNF792Q3KQV3 632 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 PGM2L1Q6PCE3 622 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 RAPH1Q70E73 1250 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 BNIPLQ7Z465 357 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 ADGRG6Q86SQ4 1221 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 NME8Q8N427 588 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 DCLK2Q8N568 766 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 NT5C3BQ969T7 300 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 ISL2Q96A47 359 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 GORASP1Q9BQQ3 440 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 TRIM4Q9C037 500 aa19.73■□□□□ 0.75
VPS28-213ENST00000530983 RBM47A0AV96 593 aaKnown RBP19.72■□□□□ 0.75
VPS28-213ENST00000530983 XPO1O14980 1071 aaKnown RBP19.72■□□□□ 0.75
VPS28-213ENST00000530983 DAB1O75553 588 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 UBTFL6P0CB48 400 aaPredicted RBP19.72■□□□□ 0.75
VPS28-213ENST00000530983 CPA3P15088 417 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 MX2P20592 715 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 GTF2A2P52657 109 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 DPYSQ14117 519 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 PAFAH1B3Q15102 231 aaKnown RBP19.72■□□□□ 0.75
VPS28-213ENST00000530983 SLC5A9Q2M3M2 681 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 SPANXN3Q5MJ09 141 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 GRTP1Q5TC63 336 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 RNF111Q6ZNA4 994 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 TNS4Q8IZW8 715 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 PLD6Q8N2A8 252 aaKnown RBP19.72■□□□□ 0.75
VPS28-213ENST00000530983 SHCBP1Q8NEM2 672 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 OR52K1Q8NGK4 314 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 PYDC1Q8WXC3 89 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 TRAPPC9Q96Q05 1148 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 OXCT2Q9BYC2 517 aaPredicted RBP19.72■□□□□ 0.75
VPS28-213ENST00000530983 KATNBL1Q9H079 304 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 SNX25Q9H3E2 840 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 UBQLN1Q9UMX0 589 aaKnown RBP19.72■□□□□ 0.75
VPS28-213ENST00000530983 PLXNB2O15031 1838 aa19.72■□□□□ 0.75
VPS28-213ENST00000530983 KCNK1O00180 336 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 F7P08709 466 aaPredicted RBP19.71■□□□□ 0.75
VPS28-213ENST00000530983 IFRD2Q12894 506 aaPredicted RBP19.71■□□□□ 0.75
VPS28-213ENST00000530983 CCDC153Q494R4 210 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 PHTF2Q8N3S3 785 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 ACTRT2Q8TDY3 377 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 OPTNQ96CV9 577 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 ATXN7L3BQ96GX2 97 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 RBBP8Q99708 897 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 FERMT1Q9BQL6 677 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 FAM49AQ9H0Q0 323 aaPredicted RBP19.71■□□□□ 0.75
VPS28-213ENST00000530983 GDAP2Q9NXN4 497 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 PDE5AO76074 875 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 DDNO94850 711 aaPredicted RBP19.71■□□□□ 0.75
VPS28-213ENST00000530983 LYNP07948 512 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 GARSP41250 739 aaKnown RBP19.71■□□□□ 0.75
VPS28-213ENST00000530983 EPHB1P54762 984 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 CCNIQ14094 377 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 NOTUMQ6P988 496 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 PID1Q7Z2X4 250 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 NPY6RQ99463 290 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 ZCWPW1Q9H0M4 648 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 SETD4Q9NVD3 440 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 CDH22Q9UJ99 828 aa19.71■□□□□ 0.75
VPS28-213ENST00000530983 DCLK1O15075 740 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 USP12O75317 370 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 GPR32O75388 356 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 DEUP1Q05D60 604 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 PEX6Q13608 980 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 SYPL2Q5VXT5 272 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 DHDDSQ86SQ9 333 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 APPL2Q8NEU8 664 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 AZIN2Q96A70 460 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 CMTM5Q96DZ9 223 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 OSMRQ99650 979 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 CYP4F11Q9HBI6 524 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 GOLGA2P5Q9HBQ8 144 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 PIGVQ9NUD9 493 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 PCDHB12Q9Y5F1 795 aa19.7■□□□□ 0.74
VPS28-213ENST00000530983 SMIM28A0A1B0GU29 152 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms