RNA–Protein interactions for RNA: ENST00000527299.1

CLNS1A-209, Transcript of chloride nucleotide-sensitive channel 1A, human

TSL 2

Gene CLNS1A, Length 387 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLNS1A-209	ENST00000527299	HERVK_113	Q902F9	699 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	EME1	Q96AY2	570 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	INTS12	Q96CB8	462 aa	Known RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RMDN1	Q96DB5	314 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ZNF778	Q96MU6	729 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PPP1R10	Q96QC0	940 aa	Known RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PANX2	Q96RD6	677 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CTRC	Q99895	268 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	DHRS9	Q9BPW9	319 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	HEPH	Q9BQS7	1158 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RHOXF2	Q9BQY4	288 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GPATCH1	Q9BRR8	931 aa	Known RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RIOK1	Q9BRS2	568 aa	Known RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	MYL10	Q9BUA6	226 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	BRIP1	Q9BX63	1249 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	KRT23	Q9C075	422 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PSTPIP2	Q9H939	334 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RNPEPL1	Q9HAU8	725 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SLC38A10	Q9HBR0	1119 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TRIM39	Q9HCM9	518 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	FANCF	Q9NPI8	374 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SEPT11	Q9NVA2	429 aa	Known RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	INTS7	Q9NVH2	962 aa	Known RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GID8	Q9NWU2	228 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PPP1R14D	Q9NXH3	145 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CLIC5	Q9NZA1	410 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	MTRF1L	Q9UGC7	380 aa	Known RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	FBXL5	Q9UKA1	691 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	AGO2	Q9UKV8	859 aa	Known RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	VANGL2	Q9ULK5	521 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ATP11B	Q9Y2G3	1177 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TRIM17	Q9Y577	477 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	AFF2	P51816	1311 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	BIVM-ERCC5	R4GMW8	1640 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SBNO1	A3KN83	1393 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	NUP155	O75694	1391 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CEMIP	Q8WUJ3	1361 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	OVOS2	A0A0G2JMS6	1433 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	OVOS2	A0A0J9YW53	1432 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	OVOS2	Q6IE36	1432 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PCF11	O94913	1555 aa	Known RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CEP170	Q5SW79	1584 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TARBP1	Q13395	1621 aa	Known RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PVALEF	A0A1B0GWK0	134 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299		A0A1W2PQ67	120 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CTAGE9	A4FU28	777 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	LRRC3C	A6NJW4	275 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PFDN6	O15212	129 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ZW10	O43264	779 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	EXTL3	O43909	919 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CCNT1	O60563	726 aa	Known RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ATP9A	O75110	1047 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CNOT3	O75175	753 aa	Known RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PROP1	O75360	226 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	BAIAP3	O94812	1187 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	KLHL2	O95198	593 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	OR5F1	O95221	314 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	LY86	O95711	162 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CRYZL1	O95825	349 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PDHA1	P08559	390 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ITGAM	P11215	1152 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ATF7	P17544	494 aa	Predicted RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	VCL	P18206	1134 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	POLR2C	P19387	275 aa	Predicted RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PSMA4	P25789	261 aa	Known RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TMOD1	P28289	359 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SERPINB3	P29508	390 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CASP14	P31944	242 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	IFNA8	P32881	189 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RPL9	P32969	192 aa	Known RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	EVI2B	P34910	448 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PHB	P35232	272 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RARRES1	P49788	294 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CDK7	P50613	346 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ZNF81	P51508	661 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	NEK4	P51957	841 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	COPA	P53621	1224 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	BPIFB3	P59826	476 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RPS3A	P61247	264 aa	Known RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	NCALD	P61601	193 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GUCY2D	Q02846	1103 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CKAP4	Q07065	602 aa	Known RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	KLHL30	Q0D2K2	578 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CETN1	Q12798	172 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	REST	Q13127	1097 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SQLE	Q14534	574 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PSMD6	Q15008	389 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	UBE3C	Q15386	1083 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SF3B3	Q15393	1217 aa	Known RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	C10orf62	Q5T681	223 aa	Predicted RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	FAM102A	Q5T9C2	384 aa	Predicted RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TTC22	Q5TAA0	569 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RNASEH2B	Q5TBB1	312 aa	Known RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ZNF658	Q5TYW1	1059 aa	Predicted RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	METRNL	Q641Q3	311 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SPECC1L	Q69YQ0	1117 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SPOPL	Q6IQ16	392 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ARMC6	Q6NXE6	501 aa		3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ESRP1	Q6NXG1	681 aa	Known RBP	3.86	□□□□□ -1.79
CLNS1A-209	ENST00000527299	FAM122C	Q6P4D5	195 aa		3.86	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms