RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 TBCBQ99426 244 aa21.27■■□□□ 1
VPS28-206ENST00000526734 FUCA2Q9BTY2 467 aa21.27■■□□□ 1
VPS28-206ENST00000526734 EDEM2Q9BV94 578 aa21.27■■□□□ 1
VPS28-206ENST00000526734 TKTL2Q9H0I9 626 aa21.27■■□□□ 1
VPS28-206ENST00000526734 SLC6A17Q9H1V8 727 aa21.27■■□□□ 1
VPS28-206ENST00000526734 WSB2Q9NYS7 404 aaPredicted RBP21.27■■□□□ 1
VPS28-206ENST00000526734 PILRBQ9UKJ0 227 aa21.27■■□□□ 1
VPS28-206ENST00000526734 SCML1Q9UN30 329 aa21.27■■□□□ 1
VPS28-206ENST00000526734 HS3ST4Q9Y661 456 aa21.27■■□□□ 1
VPS28-206ENST00000526734 RALGAPA1Q6GYQ0 2036 aa21.27■■□□□ 1
VPS28-206ENST00000526734 ITIH6Q6UXX5 1313 aa21.27■□□□□ 0.99
VPS28-206ENST00000526734 A0A1W2PQC6 194 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 GDF9O60383 454 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 CALB1P05937 261 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 UNGP13051 313 aaPredicted RBP21.26■□□□□ 0.99
VPS28-206ENST00000526734 RDXP35241 583 aaKnown RBP21.26■□□□□ 0.99
VPS28-206ENST00000526734 NNMTP40261 264 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 TPMTP51580 245 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 ECT2LQ008S8 904 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 SFSWAPQ12872 951 aaKnown RBP21.26■□□□□ 0.99
VPS28-206ENST00000526734 HNRNPA1L2Q32P51 320 aaKnown RBP21.26■□□□□ 0.99
VPS28-206ENST00000526734 TTC31Q49AM3 519 aaPredicted RBP21.26■□□□□ 0.99
VPS28-206ENST00000526734 WDR45BQ5MNZ6 344 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 LRRC31Q6UY01 552 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 ARMCX6Q7L4S7 300 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 BNIPLQ7Z465 357 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 ERLEC1Q96DZ1 483 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 ZNF419Q96HQ0 510 aaPredicted RBP21.26■□□□□ 0.99
VPS28-206ENST00000526734 C1orf74Q96LT6 269 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 NUP58Q9BVL2 599 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 NUSAP1Q9BXS6 441 aaKnown RBP21.26■□□□□ 0.99
VPS28-206ENST00000526734 SMOC1Q9H4F8 434 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 PRSS16Q9NQE7 514 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 SUSD2Q9UGT4 822 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 VANGL2Q9ULK5 521 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 ERVW-1Q9UQF0 538 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 SDK1Q7Z5N4 2213 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 THADAQ6YHU6 1953 aa21.26■□□□□ 0.99
VPS28-206ENST00000526734 CACNA1AO00555 2505 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 ABCA7Q8IZY2 2146 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.25■□□□□ 0.99
VPS28-206ENST00000526734 TARSL2A2RTX5 802 aaKnown RBP21.25■□□□□ 0.99
VPS28-206ENST00000526734 RNASEH1O60930 286 aaKnown RBP21.25■□□□□ 0.99
VPS28-206ENST00000526734 VASPP50552 380 aaPredicted RBP21.25■□□□□ 0.99
VPS28-206ENST00000526734 CDH4P55283 916 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 ZNF177Q13360 481 aaPredicted RBP21.25■□□□□ 0.99
VPS28-206ENST00000526734 DUOXA1Q1HG43 343 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 CLEC16AQ2KHT3 1053 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 STPG1Q5TH74 334 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 ZNF776Q68DI1 518 aaPredicted RBP21.25■□□□□ 0.99
VPS28-206ENST00000526734 TCEAL6Q6IPX3 200 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 SLC23A3Q6PIS1 610 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 PHF13Q86YI8 300 aaPredicted RBP21.25■□□□□ 0.99
VPS28-206ENST00000526734 TCEAL3Q969E4 200 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 TOE1Q96GM8 510 aaKnown RBP21.25■□□□□ 0.99
VPS28-206ENST00000526734 MYO19Q96H55 970 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 MRGPRX3Q96LB0 322 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 HSPA12BQ96MM6 686 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 HAPLN3Q96S86 360 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 C11orf70Q9BRQ4 267 aa21.25■□□□□ 0.99
VPS28-206ENST00000526734 METTL5Q9NRN9 209 aaKnown RBP21.25■□□□□ 0.99
VPS28-206ENST00000526734 LNP1A1A4G5 178 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 ENDOD1O94919 500 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 ADCY5O95622 1261 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 DNTTP04053 509 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 TFE3P19532 575 aaPredicted RBP21.24■□□□□ 0.99
VPS28-206ENST00000526734 ITPKAP23677 461 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 SDC4P31431 198 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 PTPN9P43378 593 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 IQCB1Q15051 598 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 C2CD6Q53TS8 623 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 TRIM61Q5EBN2 209 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 CXorf57Q6NSI4 855 aaKnown RBP21.24■□□□□ 0.99
VPS28-206ENST00000526734 IGSF8Q969P0 613 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 CFAP57Q96MR6 1250 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 AGPAT1Q99943 283 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 ADAM33Q9BZ11 813 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 SIK2Q9H0K1 926 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 ADAM22Q9P0K1 906 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 TBC1D30Q9Y2I9 924 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 DMXL1Q9Y485 3027 aa21.24■□□□□ 0.99
VPS28-206ENST00000526734 A0A1B0GTH6 734 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 EDDM13A0A1B0GTR0 161 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 PDGFRAP16234 1089 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 C1QBPQ07021 282 aaKnown RBP21.23■□□□□ 0.99
VPS28-206ENST00000526734 PTP4A2Q12974 167 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 ARL13BQ3SXY8 428 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 STRADAQ7RTN6 431 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 CIR1Q86X95 450 aaPredicted RBP21.23■□□□□ 0.99
VPS28-206ENST00000526734 SLC41A1Q8IVJ1 513 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 APCDD1Q8J025 514 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 ZNF366Q8N895 744 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 C3orf20Q8ND61 904 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 SLC30A5Q8TAD4 765 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 PCDHB18PQ96TA0 734 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 EDEM3Q9BZQ6 932 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 RSPH9Q9H1X1 276 aaPredicted RBP21.23■□□□□ 0.99
VPS28-206ENST00000526734 CD93Q9NPY3 652 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 SLC6A14Q9UN76 642 aa21.23■□□□□ 0.99
VPS28-206ENST00000526734 SYCE3A1L190 88 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms