RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 PEPDP12955 493 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 CIITAP33076 1130 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 GNALP38405 381 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 TM4SF4P48230 202 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 ZBED6P86452 979 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 SHC2P98077 582 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 GAD2Q05329 585 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 GRM4Q14833 912 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 PTGR1Q14914 329 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 TOMM20Q15388 145 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 RAB30Q15771 203 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 ODF3L2Q3SX64 289 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 C10orf62Q5T681 223 aaPredicted RBP2.66□□□□□ -1.98
CD44-216ENST00000525293 ANKRD40Q6AI12 368 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 KIAA1161Q6NSJ0 714 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 WDR93Q6P2C0 686 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 CCDC174Q6PII3 467 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 MEPCEQ7L2J0 689 aaKnown RBP2.66□□□□□ -1.98
CD44-216ENST00000525293 OR2C3Q8N628 320 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 ZFPM2Q8WW38 1151 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 ITFG2Q969R8 447 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 FAR2Q96K12 515 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 CCDC138Q96M89 665 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 ZNF347Q96SE7 839 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 PAAF1Q9BRP4 392 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 HTATIP2Q9BUP3 242 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 RANBP17Q9H2T7 1088 aaKnown RBP2.66□□□□□ -1.98
CD44-216ENST00000525293 ZHX3Q9H4I2 956 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 RETREG1Q9H6L5 497 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 YY1AP1Q9H869 796 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 ERVK-5Q9HDB9 667 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 FZD3Q9NPG1 666 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 TM7SF3Q9NS93 570 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 MTPAPQ9NVV4 582 aaKnown RBP eCLIP2.66□□□□□ -1.98
CD44-216ENST00000525293 CA14Q9ULX7 337 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 SLC8A2Q9UPR5 921 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 LAMP3Q9UQV4 416 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 LZTS1Q9Y250 596 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 UBE2J1Q9Y385 318 aaPredicted RBP2.66□□□□□ -1.98
CD44-216ENST00000525293 PCDHGB2Q9Y5G2 931 aa2.66□□□□□ -1.98
CD44-216ENST00000525293 ZNF335Q9H4Z2 1342 aaPredicted RBP2.66□□□□□ -1.98
CD44-216ENST00000525293 GXYLT2A0PJZ3 443 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 ANO9A1A5B4 782 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 BICDL2A1A5D9 508 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 A6NNC1 897 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 RASA4BC9J798 803 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 RHODO00212 210 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 PES1O00541 588 aaKnown RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 PCDH17O14917 1159 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 HNRNPDLO14979 420 aaKnown RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 PIP5K1BO14986 540 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 NKX2-8O15522 239 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 RASA4O43374 803 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 SMAD6O43541 496 aaKnown RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 MTA2O94776 668 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 CNTN5O94779 1100 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 NFATC1O95644 943 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 WNT1P04628 370 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 HSP90AA1P07900 732 aaKnown RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 ANXA6P08133 673 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 NBPF7P0C2Y1 421 aaPredicted RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 CBSLP0DN79 551 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 CDC25AP30304 524 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 MAN1A1P33908 653 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 CBSP35520 551 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 TNNT2P45379 298 aaPredicted RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 HSPA7P48741 367 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 POLD2P49005 469 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 P2RX3P56373 397 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 POU5F1BQ06416 359 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 WASHC5Q12768 1159 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 ERV3-1Q14264 604 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 HLTFQ14527 1009 aaKnown RBP eCLIP2.65□□□□□ -1.99
CD44-216ENST00000525293 AAK1Q2M2I8 961 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 MPEG1Q2M385 716 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 CCDC92Q53HC0 331 aaPredicted RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 KIAA1755Q5JYT7 1200 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 C6orf10Q5SRN2 563 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 IZUMO3Q5VZ72 239 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 ARL6IP4Q66PJ3 421 aaKnown RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 IL31Q6EBC2 164 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 TTLL5Q6EMB2 1281 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 ISM2Q6H9L7 571 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 HMBOX1Q6NT76 420 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 PDXDC1Q6P996 788 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 SLC39A5Q6ZMH5 540 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 TRAPPC11Q7Z392 1133 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 DDIASQ8IXT1 998 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 VPS37AQ8NEZ2 397 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 TMEM174Q8WUU8 243 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 CENPIQ92674 756 aaPredicted RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 CCDC47Q96A33 483 aaKnown RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 KIAA1191Q96A73 305 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 C18orf8Q96DM3 657 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 THOC3Q96J01 351 aaKnown RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 NAP1L4Q99733 375 aaKnown RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 SLX1AQ9BQ83 275 aa2.65□□□□□ -1.99
CD44-216ENST00000525293 WDR83Q9BRX9 315 aaKnown RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 MRPL44Q9H9J2 332 aaKnown RBP2.65□□□□□ -1.99
CD44-216ENST00000525293 CERS4Q9HA82 394 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms