RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 FAM47BQ8NA70 645 aa4.85□□□□□ -1.63
CD44-215ENST00000525241 AFG1LQ8WV93 481 aa4.85□□□□□ -1.63
CD44-215ENST00000525241 GOLGA1Q92805 767 aa4.85□□□□□ -1.63
CD44-215ENST00000525241 CUL5Q93034 780 aa4.85□□□□□ -1.63
CD44-215ENST00000525241 ARRDC3Q96B67 414 aa4.85□□□□□ -1.63
CD44-215ENST00000525241 CHODLQ9H9P2 273 aa4.85□□□□□ -1.63
CD44-215ENST00000525241 PLEKHA2Q9HB19 425 aa4.85□□□□□ -1.63
CD44-215ENST00000525241 SLC22A11Q9NSA0 550 aa4.85□□□□□ -1.63
CD44-215ENST00000525241 ZNF70Q9UC06 446 aaPredicted RBP4.85□□□□□ -1.63
CD44-215ENST00000525241 FEM1BQ9UK73 627 aa4.85□□□□□ -1.63
CD44-215ENST00000525241 MCIDASD6RGH6 385 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 IRAK2O43187 625 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 WNT1P04628 370 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 PRPH2P23942 346 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 MCM2P49736 904 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 RBM5P52756 815 aaKnown RBP eCLIP4.84□□□□□ -1.63
CD44-215ENST00000525241 ID2Q02363 134 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 GPR162Q16538 588 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 KIAA1755Q5JYT7 1200 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 SYNE3Q6ZMZ3 975 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 ANKS1BQ7Z6G8 1248 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 ENDOVQ8N8Q3 282 aaKnown RBP4.84□□□□□ -1.63
CD44-215ENST00000525241 PRSS3P2Q8NHM4 247 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 KTI12Q96EK9 354 aaPredicted RBP4.84□□□□□ -1.63
CD44-215ENST00000525241 PIMREGQ9BSJ6 248 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 HERC2P3Q9BVR0 1158 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 HDHD5Q9BXW7 423 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 IL21RQ9HBE5 538 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 DTX4Q9Y2E6 619 aa4.84□□□□□ -1.63
CD44-215ENST00000525241 NPIPB13A6NJU9 1138 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 NPIPB5A8MRT5 1133 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 NPIPB4C9JG80 1138 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 ACP5P13686 325 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 ACTR2P61160 394 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 PPFIA1Q13136 1202 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 ADCK5Q3MIX3 580 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 C10orf25Q5T742 122 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 ZKSCAN2Q63HK3 967 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 TMEM200AQ86VY9 491 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 ADGRF4Q8IZF3 695 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 FSIP1Q8NA03 581 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 C16orf52Q8NHV5 167 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 FAM110DQ8TAY7 271 aaPredicted RBP4.83□□□□□ -1.64
CD44-215ENST00000525241 PIGOQ8TEQ8 1089 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 IP6K1Q92551 441 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 RPL36ALQ969Q0 106 aaKnown RBP4.83□□□□□ -1.64
CD44-215ENST00000525241 ADAD1Q96M93 576 aaKnown RBP4.83□□□□□ -1.64
CD44-215ENST00000525241 ZNF778Q96MU6 729 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 RMI1Q9H9A7 625 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 TMEM45AQ9NWC5 275 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 TUBA8Q9NY65 449 aaPredicted RBP4.83□□□□□ -1.64
CD44-215ENST00000525241 IPO11Q9UI26 975 aaKnown RBP4.83□□□□□ -1.64
CD44-215ENST00000525241 PKP3Q9Y446 797 aa4.83□□□□□ -1.64
CD44-215ENST00000525241 ZMYM2Q9UBW7 1377 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 TRBV5-3A0A0A0MS03 114 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 KCNJ18B7U540 433 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 SEPT4O43236 478 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 UGDHO60701 494 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 CSF1P09603 554 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 CYP19A1P11511 503 aaPredicted RBP4.82□□□□□ -1.64
CD44-215ENST00000525241 LYL1P12980 280 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 HOXB9P17482 250 aaPredicted RBP4.82□□□□□ -1.64
CD44-215ENST00000525241 MMP13P45452 471 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 EFR3AQ14156 821 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 SEMA3AQ14563 771 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 ZRSR2Q15696 482 aaKnown RBP4.82□□□□□ -1.64
CD44-215ENST00000525241 ETFDHQ16134 617 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 MIDNQ504T8 468 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 ZNF484Q5JVG2 852 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 FBXO47Q5MNV8 452 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 C10orf76Q5T2E6 689 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 C11orf87Q6NUJ2 197 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 MTFR2Q6P444 385 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 C1QL2Q7Z5L3 287 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 PIP4P1Q86T03 277 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 EXOC8Q8IYI6 725 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 KAT2AQ92830 837 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 C1QTNF7Q9BXJ2 289 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 SPRTNQ9H040 489 aaPredicted RBP4.82□□□□□ -1.64
CD44-215ENST00000525241 PAPOLBQ9NRJ5 636 aaKnown RBP4.82□□□□□ -1.64
CD44-215ENST00000525241 TRNAU1APQ9NX07 287 aaKnown RBP4.82□□□□□ -1.64
CD44-215ENST00000525241 LUZP4Q9P127 313 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 FBXO4Q9UKT5 387 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 DERAQ9Y315 318 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.82□□□□□ -1.64
CD44-215ENST00000525241 DGKBQ9Y6T7 804 aa4.82□□□□□ -1.64
CD44-215ENST00000525241 PCSK5Q92824 1860 aa4.81□□□□□ -1.64
CD44-215ENST00000525241 TTBK1Q5TCY1 1321 aaPredicted RBP4.81□□□□□ -1.64
CD44-215ENST00000525241 F8W810 466 aa4.81□□□□□ -1.64
CD44-215ENST00000525241 PKMP14618 531 aaKnown RBP4.81□□□□□ -1.64
CD44-215ENST00000525241 RXRAP19793 462 aa4.81□□□□□ -1.64
CD44-215ENST00000525241 AVPR2P30518 371 aa4.81□□□□□ -1.64
CD44-215ENST00000525241 PNPLA4P41247 253 aa4.81□□□□□ -1.64
CD44-215ENST00000525241 ZBTB16Q05516 673 aa4.81□□□□□ -1.64
CD44-215ENST00000525241 ALKBH1Q13686 389 aaKnown RBP4.81□□□□□ -1.64
CD44-215ENST00000525241 ARL13AQ5H913 290 aaPredicted RBP4.81□□□□□ -1.64
CD44-215ENST00000525241 ZNF425Q6IV72 752 aa4.81□□□□□ -1.64
CD44-215ENST00000525241 SLC30A9Q6PML9 568 aa4.81□□□□□ -1.64
CD44-215ENST00000525241 SHC4Q6S5L8 630 aa4.81□□□□□ -1.64
CD44-215ENST00000525241 ZNF793Q6ZN11 406 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms