RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 P2RY13Q9BPV8 354 aa15.79■□□□□ 0.12
LSM1-203ENST00000520755 FOXQ1Q9C009 403 aa15.79■□□□□ 0.12
LSM1-203ENST00000520755 DDX56Q9NY93 547 aaKnown RBP15.79■□□□□ 0.12
LSM1-203ENST00000520755 CWC15Q9P013 229 aaKnown RBP15.79■□□□□ 0.12
LSM1-203ENST00000520755 STIM2Q9P246 746 aa15.79■□□□□ 0.12
LSM1-203ENST00000520755 OR12D3Q9UGF7 316 aa15.79■□□□□ 0.12
LSM1-203ENST00000520755 VANGL2Q9ULK5 521 aa15.79■□□□□ 0.12
LSM1-203ENST00000520755 IGLV3-10A0A075B6K4 115 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 KANSL1LA0AUZ9 987 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 FAM86C2PA6NEL3 165 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 SHISA7A6NL88 538 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 E9PAM4 449 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 TULP3O75386 442 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 PENKP01210 267 aaPredicted RBP15.78■□□□□ 0.12
LSM1-203ENST00000520755 GOT1P17174 413 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 CDKN2BP42772 138 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 GALK1P51570 392 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 RWDD2BP57060 319 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 RPS24P62847 133 aaKnown RBP15.78■□□□□ 0.12
LSM1-203ENST00000520755 KDSRQ06136 332 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 DPYSQ14117 519 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 C5orf22Q49AR2 442 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 PAPD7Q5XG87 772 aaKnown RBP15.78■□□□□ 0.12
LSM1-203ENST00000520755 C1orf228Q6PIY5 440 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 SPOCD1Q6ZMY3 1216 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 UBL4BQ8N7F7 174 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 RNF25Q96BH1 459 aaPredicted RBP15.78■□□□□ 0.12
LSM1-203ENST00000520755 C1orf74Q96LT6 269 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 RPRD1AQ96P16 312 aaPredicted RBP15.78■□□□□ 0.12
LSM1-203ENST00000520755 ZNF670Q9BS34 389 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 LTB4R2Q9NPC1 389 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 DNAJC17Q9NVM6 304 aaKnown RBP15.78■□□□□ 0.12
LSM1-203ENST00000520755 SNX12Q9UMY4 172 aa15.78■□□□□ 0.12
LSM1-203ENST00000520755 MRPS17Q9Y2R5 130 aaKnown RBP15.78■□□□□ 0.12
LSM1-203ENST00000520755 MUC22E2RYF6 1773 aaPredicted RBP15.77■□□□□ 0.12
LSM1-203ENST00000520755 hCG_1818297A0A087WSY0 165 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 KCNK3O14649 394 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 TRIM24O15164 1050 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 CREB3O43889 395 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 CACNG3O60359 315 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 SRGAP2O75044 1071 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 TARSP26639 723 aaKnown RBP15.77■□□□□ 0.12
LSM1-203ENST00000520755 HOXD9P28356 352 aaPredicted RBP15.77■□□□□ 0.12
LSM1-203ENST00000520755 CXCR5P32302 372 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 ADCY2Q08462 1091 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 KRT81Q14533 505 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 PDK2Q15119 407 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 RABGAP1LQ5R372 815 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 LRRC31Q6UY01 552 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 CIR1Q86X95 450 aaPredicted RBP15.77■□□□□ 0.12
LSM1-203ENST00000520755 VSIG1Q86XK7 387 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 ETFBKMTQ8IXQ9 262 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 COG1Q8WTW3 980 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 UBE2Q2Q8WVN8 375 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 EXOC4Q96A65 974 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 PBXIP1Q96AQ6 731 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 CSPG4P5Q96PW8 444 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 OSBPL9Q96SU4 736 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 PNKPQ96T60 521 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 CARD9Q9H257 536 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 FBRSL1Q9HCM7 1045 aaKnown RBP15.77■□□□□ 0.12
LSM1-203ENST00000520755 ARHGEF4Q9NR80 690 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 DEC1Q9P2X7 70 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 ZNF212Q9UDV6 495 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 CLEC4EQ9ULY5 219 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.77■□□□□ 0.12
LSM1-203ENST00000520755 MTF2Q9Y483 593 aaPredicted RBP15.77■□□□□ 0.12
LSM1-203ENST00000520755 MFHAS1Q9Y4C4 1052 aa15.77■□□□□ 0.12
LSM1-203ENST00000520755 ATG2BQ96BY7 2078 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 CTAGE9A4FU28 777 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 FAM170BA6NMN3 283 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.76■□□□□ 0.11
LSM1-203ENST00000520755 ZNF487B1APH4 448 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 EEF2KO00418 725 aaKnown RBP15.76■□□□□ 0.11
LSM1-203ENST00000520755 CNTN5O94779 1100 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 PTPN7P35236 360 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 EIF2DP41214 584 aaKnown RBP15.76■□□□□ 0.11
LSM1-203ENST00000520755 DGKGP49619 791 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 TPI1P60174 286 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 GRSF1Q12849 480 aaKnown RBP eCLIP15.76■□□□□ 0.11
LSM1-203ENST00000520755 LLGL1Q15334 1064 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 PPP2R5EQ16537 467 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 ALFQ53S48 1182 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 ZFYVE27Q5T4F4 411 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 RNF43Q68DV7 783 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 CWF19L1Q69YN2 538 aaKnown RBP15.76■□□□□ 0.11
LSM1-203ENST00000520755 GRAMD4Q6IC98 578 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 RFX8Q6ZV50 586 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 NLRP14Q86W24 1093 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 RCOR2Q8IZ40 523 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 CARNMT1Q8N4J0 409 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 PQLC3Q8N755 202 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 KCTD6Q8NC69 237 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 PCDH19Q8TAB3 1148 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 TBC1D31Q96DN5 1066 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 RBM41Q96IZ5 413 aaKnown RBP15.76■□□□□ 0.11
LSM1-203ENST00000520755 EPAS1Q99814 870 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 CALN1Q9BXU9 219 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 ETNK2Q9NVF9 386 aa15.76■□□□□ 0.11
LSM1-203ENST00000520755 MPP6Q9NZW5 540 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms