RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 LRRC74AQ0VAA2 488 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 SLC39A12Q504Y0 691 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 FAM171A1Q5VUB5 890 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 SETD3Q86TU7 594 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-204ENST00000519664 ZNF483Q8TF39 744 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-204ENST00000519664 LENG1Q96BZ8 264 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-204ENST00000519664 CERS2Q96G23 380 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 DCUN1D1Q96GG9 259 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 NDNQ99608 321 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 ECSITQ9BQ95 431 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 CDHR5Q9HBB8 845 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 HPS4Q9NQG7 708 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 TRDMT1O14717 391 aaKnown RBP11.94□□□□□ -0.5
SYNPO-204ENST00000519664 UBDO15205 165 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 VNN1O95497 513 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 ASMTLO95671 621 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 CKMP06732 381 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 HOXD10P28358 340 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 FSCN1Q16658 493 aaKnown RBP11.94□□□□□ -0.5
SYNPO-204ENST00000519664 PLPPR4Q7Z2D5 763 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 XYLT1Q86Y38 959 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 ZDHHC17Q8IUH5 632 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 CATSPER1Q8NEC5 780 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 EMID1Q96A84 441 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-204ENST00000519664 P2RY11Q96G91 374 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 ZDHHC18Q9NUE0 388 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 KIF17Q9P2E2 1029 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 CRLS1Q9UJA2 301 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 LZTS1Q9Y250 596 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 MAP1BP46821 2468 aaKnown RBP11.94□□□□□ -0.5
SYNPO-204ENST00000519664 GRIN2DO15399 1336 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 UNGP13051 313 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-204ENST00000519664 ALADP13716 330 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 EPHA3P29320 983 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 WEE1P30291 646 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 ABCE1P61221 599 aaKnown RBP11.94□□□□□ -0.5
SYNPO-204ENST00000519664 ZNF410Q86VK4 478 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 PLD5Q8N7P1 536 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 SMARCD1Q96GM5 515 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 ST6GALNAC4Q9H4F1 302 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 PIDD1Q9HB75 910 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 ARL8BQ9NVJ2 186 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 MYPNQ86TC9 1320 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SOWAHBA6NEL2 793 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 NCAM2O15394 837 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 KATNA1O75449 491 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 GUCA1CO95843 209 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SLC2A3P11169 496 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 ARL2P36404 184 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SEPHS2Q99611 448 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 ASPSCR1Q9BZE9 553 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 NMUR2Q9GZQ4 415 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 DMAP1Q9NPF5 467 aaPredicted RBP11.93□□□□□ -0.5
SYNPO-204ENST00000519664 HMGXB4Q9UGU5 601 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 PCDHGB4Q9UN71 923 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 PCDHB7Q9Y5E2 793 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 ACTL7BQ9Y614 415 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 DUOX1Q9NRD9 1551 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 KLRG2A4D1S0 409 aaPredicted RBP11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SAC3D1A6NKF1 404 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 RAMP2O60895 175 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 GLP2RO95838 553 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SERPIND1P05546 499 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 ABHD2P08910 425 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SMIM10L2AP0DMW4 78 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SMIM10L2BP0DMW5 78 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 RAG1P15918 1043 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 ALDH1A3P47895 512 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SFSWAPQ12872 951 aaKnown RBP11.93□□□□□ -0.5
SYNPO-204ENST00000519664 PARP6Q2NL67 630 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 WASHC2DQ5SRD0 308 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 TTC30AQ86WT1 665 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SH3TC2Q8TF17 1288 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 ZNF333Q96JL9 665 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 CLPTM1LQ96KA5 538 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 GORASP1Q9BQQ3 440 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 BRD8Q9H0E9 1235 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SEMA6AQ9H2E6 1030 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 RMI1Q9H9A7 625 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 ZMYM2Q9UBW7 1377 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 C2orf81A6NN90 581 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 PRR5-ARHGAP8B1AHC4 643 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 ZBTB24O43167 697 aaPredicted RBP11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SOAT2O75908 522 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 PARNO95453 639 aaKnown RBP11.93□□□□□ -0.5
SYNPO-204ENST00000519664 ZNF23P17027 643 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SLC11A2P49281 568 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 TBX4P57082 545 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 ARHGAP8P85298 464 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 TBCCQ15814 346 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 PPM1JQ5JR12 505 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 CERCAMQ5T4B2 595 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 NEPROQ6NW34 567 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 DNAJC14Q6Y2X3 702 aaPredicted RBP11.93□□□□□ -0.5
SYNPO-204ENST00000519664 RIPOR1Q6ZS17 1223 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 DEFB128Q7Z7B8 93 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 RNF180Q86T96 592 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 PSTKQ8IV42 348 aaKnown RBP11.93□□□□□ -0.5
SYNPO-204ENST00000519664 TLCD1Q96CP7 247 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 NTPCRQ9BSD7 190 aaKnown RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms