RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 FJX1Q86VR8 437 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 FAM217AQ8IXS0 508 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 SLC25A41Q8N5S1 370 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 LRRC46Q96FV0 321 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 IGSF21Q96ID5 467 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 FAR2Q96K12 515 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 UNKQ9C0B0 810 aaKnown RBP3.2□□□□□ -1.9
NUP54-208ENST00000508604 MAGEH1Q9H213 219 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 PNPLA8Q9NP80 782 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 PNRC2Q9NPJ4 139 aaKnown RBP3.2□□□□□ -1.9
NUP54-208ENST00000508604 DTX4Q9Y2E6 619 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 UBE2J1Q9Y385 318 aaPredicted RBP3.2□□□□□ -1.9
NUP54-208ENST00000508604 SNX13Q9Y5W8 968 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 SLC4A4Q9Y6R1 1079 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 NOTCH3Q9UM47 2321 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 KRTAP9-6A8MVA2 160 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 BUB3O43684 328 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 SERPINB2P05120 415 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 SNRNP70P08621 437 aaKnown RBP3.2□□□□□ -1.9
NUP54-208ENST00000508604 CHRNA5P30532 468 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 SLC16A2P36021 539 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 DLX5P56178 289 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 ANAPC15P60006 121 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 TRAF1Q13077 416 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 CLIP4Q8N3C7 705 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 FAM156AQ8NDB6 213 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 ADAMTS14Q8WXS8 1223 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 KAT2AQ92830 837 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 WDR77Q9BQA1 342 aaPredicted RBP3.2□□□□□ -1.9
NUP54-208ENST00000508604 NUDT22Q9BRQ3 303 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 MAGEB5Q9BZ81 275 aa3.2□□□□□ -1.9
NUP54-208ENST00000508604 MAGED2Q9UNF1 606 aaPredicted RBP3.2□□□□□ -1.9
NUP54-208ENST00000508604 LMTK3Q96Q04 1460 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 CXorf65A6NEN9 183 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 ASAP2O43150 1006 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 NEURL1O76050 574 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 VIPP01282 170 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 IGLV2-11P01706 119 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 MST1P26927 711 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 ATP1A4Q13733 1029 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 ZRSR1Q15695 479 aaKnown RBP3.19□□□□□ -1.9
NUP54-208ENST00000508604 KRT71Q3SY84 523 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 ERAP2Q6P179 960 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 PIK3AP1Q6ZUJ8 805 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 MUC20Q8N307 709 aaPredicted RBP3.19□□□□□ -1.9
NUP54-208ENST00000508604 DPP10Q8N608 796 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 ENGASEQ8NFI3 743 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 BTBD1Q9H0C5 482 aa3.19□□□□□ -1.9
NUP54-208ENST00000508604 AREL1O15033 823 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 ZBED1O96006 694 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 SP1P08047 785 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 F7P08709 466 aaPredicted RBP3.18□□□□□ -1.9
NUP54-208ENST00000508604 CHRNB2P17787 502 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 STAT1P42224 750 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 SELENOVP59797 346 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 ACSM2AQ08AH3 577 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 KRTAP24-1Q3LI83 254 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 CCDC28AQ8IWP9 274 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 RFLNBQ8N5W9 214 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 BICD2Q8TD16 824 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 FAM216AQ8WUB2 273 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 NODALQ96S42 347 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 DDX31Q9H8H2 851 aaKnown RBP3.18□□□□□ -1.9
NUP54-208ENST00000508604 NOB1Q9ULX3 412 aaKnown RBP3.18□□□□□ -1.9
NUP54-208ENST00000508604 DOCK7Q96N67 2140 aa3.18□□□□□ -1.9
NUP54-208ENST00000508604 PRR23AA6NEV1 266 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 CLCA1A8K7I4 914 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 HRGP04196 525 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 PDGFRBP09619 1106 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 MYL4P12829 197 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 DAOP14920 347 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 RFX5P48382 616 aaPredicted RBP3.17□□□□□ -1.9
NUP54-208ENST00000508604 POLE2P56282 527 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 CSHL1Q14406 222 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 TMEM88Q6PEY1 159 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 C16orf89Q6UX73 402 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 ZNF367Q7RTV3 350 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 TCP11L2Q8N4U5 519 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 TMED6Q8WW62 240 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 ADAD1Q96M93 576 aaKnown RBP3.17□□□□□ -1.9
NUP54-208ENST00000508604 POLDIP3Q9BY77 421 aaKnown RBP3.17□□□□□ -1.9
NUP54-208ENST00000508604 B3GNT4Q9C0J1 378 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 NUP62CLQ9H1M0 184 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 AS3MTQ9HBK9 375 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 IL36RNQ9UBH0 155 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 F8W8V4 182 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 TPP1O14773 563 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 NPC1O15118 1278 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 KCNJ13O60928 360 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 ALDOAP04075 364 aaKnown RBP3.17□□□□□ -1.9
NUP54-208ENST00000508604 SRGAP2BP0DMP2 458 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 DAG1Q14118 895 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 BEND5Q7L4P6 421 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 PALB2Q86YC2 1186 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 SNX27Q96L92 541 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 FIZ1Q96SL8 496 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 PCDHAC1Q9H158 963 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 IGSF9Q9P2J2 1179 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 KIF26BQ2KJY2 2108 aa3.17□□□□□ -1.9
NUP54-208ENST00000508604 A0A087WZ62 844 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms