RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 CLDN11O75508 207 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 APOC2P02655 101 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 EPHB2P29323 1055 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 GGCXP38435 758 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 PAFAH1B1P43034 410 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 MAPKAPK2P49137 400 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 CDH4P55283 916 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 CKAP4Q07065 602 aaKnown RBP7.41□□□□□ -1.22
NUP54-204ENST00000506098 CYP1B1Q16678 543 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 LONRF2Q1L5Z9 754 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 EML3Q32P44 896 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 MPPE1Q53F39 396 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 ALFQ53S48 1182 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 FYB2Q5VWT5 728 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 AFMIDQ63HM1 303 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 KAZNQ674X7 775 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 NCBP2-AS2Q69YL0 99 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 RFWD3Q6PCD5 774 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 DRICH1Q6PGQ1 229 aaPredicted RBP7.41□□□□□ -1.22
NUP54-204ENST00000506098 RFX6Q8HWS3 928 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 LGI2Q8N0V4 545 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 UMODL1-AS1Q8N2C9 162 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 RTL3Q8N8U3 475 aaKnown RBP7.41□□□□□ -1.22
NUP54-204ENST00000506098 C12orf50Q8NA57 414 aaPredicted RBP7.41□□□□□ -1.22
NUP54-204ENST00000506098 HJURPQ8NCD3 748 aaPredicted RBP7.41□□□□□ -1.22
NUP54-204ENST00000506098 DEPDC1BQ8WUY9 529 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 FGF14Q92915 247 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 NXPE3Q969Y0 559 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 TMA16Q96EY4 203 aaKnown RBP7.41□□□□□ -1.22
NUP54-204ENST00000506098 PRICKLE1Q96MT3 831 aaPredicted RBP7.41□□□□□ -1.22
NUP54-204ENST00000506098 RPRD1AQ96P16 312 aaPredicted RBP7.41□□□□□ -1.22
NUP54-204ENST00000506098 FAM83CQ9BQN1 747 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 HEMGNQ9BXL5 484 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 FRMD8P1Q9BZ68 369 aaPredicted RBP7.41□□□□□ -1.22
NUP54-204ENST00000506098 PLA2G2FQ9BZM2 168 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 LINC00597Q9H2U6 94 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 SPHK2Q9NRA0 654 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 HOMER3Q9NSC5 361 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 ETNK2Q9NVF9 386 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 THG1LQ9NWX6 298 aaKnown RBP7.41□□□□□ -1.22
NUP54-204ENST00000506098 MPP6Q9NZW5 540 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 MARK1Q9P0L2 795 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 STIM2Q9P246 746 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 TBC1D30Q9Y2I9 924 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 NR2E1Q9Y466 385 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 COL6A3P12111 3177 aa7.41□□□□□ -1.22
NUP54-204ENST00000506098 NCOR1O75376 2440 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 VGLL3A8MV65 326 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 C2CD4DB7Z1M9 353 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 CCDC188H7C350 402 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 NCAM2O15394 837 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 DAPK3O43293 454 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 TBL1XO60907 577 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 CNTN5O94779 1100 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 PENKP01210 267 aaPredicted RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 NEFHP12036 1026 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 PSMC3P17980 439 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 HOXD9P28356 352 aaPredicted RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 SERPINB6P35237 376 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 IFNAR2P48551 515 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 IRAK1P51617 712 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 SGSHP51688 502 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 NDST2P52849 883 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 YBEYP58557 167 aaPredicted RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 RPS24P62847 133 aaKnown RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 ZNF33AQ06730 810 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 SLC10A2Q12908 348 aaPredicted RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 XRCC4Q13426 336 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 HTR4Q13639 388 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 NOMO1Q15155 1222 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 PDGFRLQ15198 375 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 SKIV2LQ15477 1246 aaKnown RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 CCNG2Q16589 344 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 CCDC181Q5TID7 509 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 RHBDF2Q6PJF5 856 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 PARM1Q6UWI2 310 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 TMCO3Q6UWJ1 677 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 ZNF783Q6ZMS7 281 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 BZW1Q7L1Q6 419 aaKnown RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 SETD3Q86TU7 594 aaPredicted RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 TMEM25Q86YD3 366 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 LRRC49Q8IUZ0 686 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 ARHGAP12Q8IWW6 846 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 CEP112Q8N8E3 955 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 PRELID2Q8N945 189 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 TDRD5Q8NAT2 981 aaKnown RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 MAFAQ8NHW3 353 aaPredicted RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 FIBINQ8TAL6 211 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 SLC35B2Q8TB61 432 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.4□□□□□ -1.22
NUP54-204ENST00000506098 PPM1EQ8WY54 764 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 P3H4Q92791 437 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 IRF7Q92985 503 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 ASIC4Q96FT7 647 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 P2RY11Q96G91 374 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 RPGRIP1Q96KN7 1286 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 CAPZA3Q96KX2 299 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 FAM210AQ96ND0 272 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 OLFM3Q96PB7 478 aa7.4□□□□□ -1.22
NUP54-204ENST00000506098 MYCBPQ99417 103 aaPredicted RBP7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms