RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 NXF3Q9H4D5 531 aaKnown RBP16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SYBUQ9NX95 663 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 OPHN1O60890 802 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PROCP04070 461 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ITGA2BP08514 1039 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 HSPA1AP0DMV8 641 aaKnown RBP16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 HSPA1BP0DMV9 641 aaKnown RBP16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PSMB4P28070 264 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 GMPRP36959 345 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 GLUD2P49448 558 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SULT1E1P49888 294 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ACTR3P61158 418 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 TRMT5Q32P41 509 aaKnown RBP16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SLC25A52Q3SY17 297 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PPM1JQ5JR12 505 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 BNIPLQ7Z465 357 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 REM2Q8IYK8 340 aaPredicted RBP16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 TRPV1Q8NER1 839 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PPP1R14CQ8TAE6 165 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 IL1RAPL1Q9NZN1 696 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 DCDC2Q9UHG0 476 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SORCS3Q9UPU3 1222 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 GINS2Q9Y248 185 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PTCH2Q9Y6C5 1203 aa16.5■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 A0A088AWK7 358 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 AHCYL1O43865 530 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 GPR32O75388 356 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 RECQL4O94761 1208 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 NAB1Q13506 487 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 EFHC1Q5JVL4 640 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 FBXO47Q5MNV8 452 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 TMEM154Q6P9G4 183 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 LIMS2Q7Z4I7 341 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CCNJLQ8IV13 435 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 C10orf107Q8IVU9 208 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 WDR75Q8IWA0 830 aaKnown RBP16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 TP53INP2Q8IXH6 220 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SPDYE1Q8NFV5 336 aaPredicted RBP16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 RAET1EQ8TD07 263 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 RNF139Q8WU17 664 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CDKL2Q92772 493 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PGLYRP2Q96PD5 576 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 APBA2Q99767 749 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SETD4Q9NVD3 440 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 TMEM216Q9P0N5 145 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 MEI4A8MW99 385 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 KPNA7A9QM74 516 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ZNF195O14628 629 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 RTN3O95197 1032 aaPredicted RBP16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SERPINE1P05121 402 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 FESP07332 822 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SKIP12755 728 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ANPEPP15144 967 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 AKAP5P24588 427 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 MAGEA8P43361 318 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SMAD1Q15797 465 aaKnown RBP16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CES3Q6UWW8 571 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CATSPER4Q7RTX7 472 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PSTKQ8IV42 348 aaKnown RBP16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ZNF567Q8N184 647 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 NT5C3BQ969T7 300 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 STN1Q9H668 368 aaKnown RBP16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PNPOQ9NVS9 261 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CHCHD3Q9NX63 227 aaKnown RBP16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SRRDQ9UH36 339 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 UBQLN1Q9UMX0 589 aaKnown RBP16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 TSC2P49815 1807 aa16.49■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 LAMA3Q16787 3333 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ERVK-10P10266 1014 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 HOXD8P13378 290 aaPredicted RBP16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CCND3P30281 292 aaPredicted RBP16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 MLH1P40692 756 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 OLIG2Q13516 323 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 INSCQ1MX18 579 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 BSPRYQ5W0U4 402 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 OLFML2BQ68BL8 750 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 TRIM74Q86UV6 250 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 TRIM73Q86UV7 250 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PIGZQ86VD9 579 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 FCRL3Q96P31 734 aaPredicted RBP16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 GORASP1Q9BQQ3 440 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PRDM12Q9H4Q4 367 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PRDM16Q9HAZ2 1276 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 GDAP2Q9NXN4 497 aa16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 RANBP2P49792 3224 aaKnown RBP16.48■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 XPO1O14980 1071 aaKnown RBP16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 MAP3K7O43318 606 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 DAB1O75553 588 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 CIB2O75838 187 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 MMP3P08254 477 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SMPD1P17405 629 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 SP100P23497 879 aaPredicted RBP16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 IDH3AP50213 366 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 ERFP50548 548 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PAFAH1B3Q15102 231 aaKnown RBP16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 OSTM1Q86WC4 334 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 PPFIBP2Q8ND30 876 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 OR6Y1Q8NGX8 325 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 NPY6RQ99463 290 aa16.47■□□□□ 0.23
MSH5-SAPCD1-208ENST00000498473 FAM49AQ9H0Q0 323 aaPredicted RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms