RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 RAB3IL1Q8TBN0 382 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 MGARPQ8TDB4 240 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 LRRC8CQ8TDW0 803 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 DQX1Q8TE96 717 aaKnown RBP11.03□□□□□ -0.64
USP4-214ENST00000491791 LINC01599Q8WXQ3 324 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 ARNTL2Q8WYA1 636 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 ZNF75CPQ92670 426 aaPredicted RBP11.03□□□□□ -0.64
USP4-214ENST00000491791 STAMBPL1Q96FJ0 436 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 C1orf74Q96LT6 269 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 GLT1D1Q96MS3 346 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 PPP1R2P1Q96PQ5 205 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 CDX2Q99626 313 aaPredicted RBP11.03□□□□□ -0.64
USP4-214ENST00000491791 COL25A1Q9BXS0 654 aaPredicted RBP11.03□□□□□ -0.64
USP4-214ENST00000491791 OXCT2Q9BYC2 517 aaPredicted RBP11.03□□□□□ -0.64
USP4-214ENST00000491791 PITPNM3Q9BZ71 974 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 KIF9Q9HAQ2 790 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 RXFP1Q9HBX9 757 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 SMYD2Q9NRG4 433 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 TRMT13Q9NUP7 481 aaKnown RBP11.03□□□□□ -0.64
USP4-214ENST00000491791 DDIT4Q9NX09 232 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 TMEM161AQ9NX61 479 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.03□□□□□ -0.64
USP4-214ENST00000491791 CACNG4Q9UBN1 327 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 OR12D3Q9UGF7 316 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 GRID1Q9ULK0 1009 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 NEU3Q9UQ49 428 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 MFHAS1Q9Y4C4 1052 aa11.03□□□□□ -0.64
USP4-214ENST00000491791 PLXNA3P51805 1871 aa11.02□□□□□ -0.64
USP4-214ENST00000491791 TMEM265A0A087WTH1 108 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 TRIM43BA6NCK2 446 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 CFAP73A6NFT4 308 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 CXorf49A8MYA2 514 aaPredicted RBP11.02□□□□□ -0.65
USP4-214ENST00000491791 KCNU1A8MYU2 1149 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 FGF10O15520 208 aaPredicted RBP11.02□□□□□ -0.65
USP4-214ENST00000491791 PQBP1O60828 265 aaKnown RBP11.02□□□□□ -0.65
USP4-214ENST00000491791 RFPL1O75677 317 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 RASSF9O75901 435 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 PGAM1P18669 254 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 BDNFP23560 247 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 CCNCP24863 283 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 CRHR1P34998 444 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 GARSP41250 739 aaKnown RBP11.02□□□□□ -0.65
USP4-214ENST00000491791 NPY2RP49146 381 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 CDK7P50613 346 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 YWHAHQ04917 246 aaPredicted RBP11.02□□□□□ -0.65
USP4-214ENST00000491791 SMARCB1Q12824 385 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 BNIP1Q12981 228 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 MTA1Q13330 715 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 TEX44Q53QW1 395 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 CLLU1OSQ5K130 101 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 C9orf50Q5SZB4 431 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 FAXCQ5TGI0 409 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 AFMIDQ63HM1 303 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 ITPRIPL1Q6GPH6 555 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 TAC4Q86UU9 113 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 CCDC117Q8IWD4 279 aaPredicted RBP11.02□□□□□ -0.65
USP4-214ENST00000491791 ARHGAP18Q8N392 663 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 MICALL1Q8N3F8 863 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 MAFAQ8NHW3 353 aaPredicted RBP11.02□□□□□ -0.65
USP4-214ENST00000491791 GDAP1Q8TB36 358 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 URGCPQ8TCY9 931 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 TCP10LQ8TDR4 215 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 ISL2Q96A47 359 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 TRIM43Q96BQ3 446 aaPredicted RBP11.02□□□□□ -0.65
USP4-214ENST00000491791 SERAC1Q96JX3 654 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 TEKT5Q96M29 485 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 CEP295NLQ96MC4 621 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 GBA3Q9H227 469 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 CASS4Q9NQ75 786 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 KLHL14Q9P2G3 628 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 PHTF1Q9UMS5 762 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 SCML2Q9UQR0 700 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 NOD1Q9Y239 953 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 LTBP2Q14767 1821 aa11.02□□□□□ -0.65
USP4-214ENST00000491791 A0A1W2PQ45 241 aaPredicted RBP11.01□□□□□ -0.65
USP4-214ENST00000491791 A0A1W2PQY0 241 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 HMX2A2RU54 273 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 TRIM49D1C9J1S8 452 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 ANKRD65E5RJM6 399 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 I3L4J1 428 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 ARVCFO00192 962 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 BIRC5O15392 142 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 CREB3O43889 395 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 LPXNO60711 386 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 LRIG2O94898 1065 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 MAP3K6O95382 1288 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 AMHP03971 560 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 ITGB1P05556 798 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 FOSL2P15408 326 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 LIG3P49916 1009 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 FPGSQ05932 587 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 TNK2Q07912 1038 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 AP1B1Q10567 949 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 IFRD2Q12894 506 aaPredicted RBP11.01□□□□□ -0.65
USP4-214ENST00000491791 SPANXN3Q5MJ09 141 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 CAPN12Q6ZSI9 719 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 DENND5BQ6ZUT9 1274 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 SCD5Q86SK9 330 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 TMEM135Q86UB9 458 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 MON1AQ86VX9 555 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms