RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 TPK1Q9H3S4 243 aa6.38□□□□□ -1.39
VPS13D-209ENST00000487188 RAD21L1Q9H4I0 556 aa6.38□□□□□ -1.39
VPS13D-209ENST00000487188 DHX35Q9H5Z1 703 aaKnown RBP6.38□□□□□ -1.39
VPS13D-209ENST00000487188 NOL6Q9H6R4 1146 aaKnown RBP6.38□□□□□ -1.39
VPS13D-209ENST00000487188 SPC25Q9HBM1 224 aa6.38□□□□□ -1.39
VPS13D-209ENST00000487188 POPDC2Q9HBU9 364 aa6.38□□□□□ -1.39
VPS13D-209ENST00000487188 HMG20AQ9NP66 347 aa6.38□□□□□ -1.39
VPS13D-209ENST00000487188 PNPLA8Q9NP80 782 aa6.38□□□□□ -1.39
VPS13D-209ENST00000487188 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS13D-209ENST00000487188 MRPL11Q9Y3B7 192 aaKnown RBP6.38□□□□□ -1.39
VPS13D-209ENST00000487188 NR2E3Q9Y5X4 410 aa6.38□□□□□ -1.39
VPS13D-209ENST00000487188 ARFGEF1Q9Y6D6 1849 aa6.38□□□□□ -1.39
VPS13D-209ENST00000487188 IGLV3-22A0A075B6J6 115 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 IGKV6D-41A0A0C4DH26 115 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 PRSS51A0A1B0GVH4 220 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 KRBA1A5PL33 1030 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 HTRA2O43464 458 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 AMHP03971 560 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 ALOX5P09917 674 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 ZNF182P17025 639 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 IL10P22301 178 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 NPTX2P47972 431 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 RAD23AP54725 363 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 OGDHQ02218 1023 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 SP4Q02446 784 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 ITPK1Q13572 414 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 ZNF846Q147U1 533 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 PCLAFQ15004 111 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 MAPRE2Q15555 327 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 GLRA4Q5JXX5 417 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 SNRNP48Q6IEG0 339 aaKnown RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 ELMSAN1Q6PJG2 1045 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 ZNF354CQ86Y25 554 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 CPNE9Q8IYJ1 553 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 ADGRF2Q8IZF7 708 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 CCNYL1Q8N7R7 359 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 ZNF420Q8TAQ5 688 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 LRRC39Q96DD0 335 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 OTUD5Q96G74 571 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 AGAP3Q96P47 875 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 TCF12Q99081 682 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 EHD1Q9H4M9 534 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 RPF2Q9H7B2 306 aaKnown RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 GTSE1Q9NYZ3 720 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 COPG2Q9UBF2 871 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 CTDP1Q9Y5B0 961 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 TAF1P21675 1872 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 COL24A1Q17RW2 1714 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 QSER1Q2KHR3 1735 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 APOL1O14791 398 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 PLSCR1O15162 318 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 AQP9O43315 295 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 PABPC1P11940 636 aaKnown RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 RPL10P27635 214 aaKnown RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 BMXP51813 675 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 NME5P56597 212 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 MS4A2Q01362 244 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 PRPSAP1Q14558 356 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 INPP5AQ14642 412 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 KCNJ11Q14654 390 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 CCDC142Q17RM4 750 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 TBCELQ5QJ74 424 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 NANOGP8Q6NSW7 305 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 SH2D5Q6ZV89 423 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 MAP4K3Q8IVH8 894 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 CDKL3Q8IVW4 592 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 TNS4Q8IZW8 715 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 FNIP1Q8TF40 1166 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 MKL1Q969V6 931 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 SGF29Q96ES7 293 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 CEP170P1Q96L14 293 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 KLHL32Q96NJ5 620 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 RANBP9Q96S59 729 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 SACM1LQ9NTJ5 587 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 ASNSD1Q9NWL6 643 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 RBAKQ9NYW8 714 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 VPS51Q9UID3 782 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 CNOT11Q9UKZ1 510 aaKnown RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 ERGIC3Q9Y282 383 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 PCDHB12Q9Y5F1 795 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 C7orf72A4D263 438 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 ZNF701M0R085 212 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 TRIM13O60858 407 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 LSM8O95777 96 aaKnown RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 ATP2B4P23634 1241 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 PRKCHP24723 683 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 MPSTP25325 297 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 RBL1P28749 1068 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 RALGDSQ12967 914 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 MMRN1Q13201 1228 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 GRAPQ13588 217 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 NFIXQ14938 502 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 RAB39AQ14964 217 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 PIGGQ5H8A4 983 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 RSBN1LQ6PCB5 846 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-209ENST00000487188 ABRAXAS1Q6UWZ7 409 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 RNF19BQ6ZMZ0 732 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 KCTD8Q6ZWB6 473 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 CARM1Q86X55 608 aa6.37□□□□□ -1.39
VPS13D-209ENST00000487188 CAMK1DQ8IU85 385 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms