RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 TRIM42Q8IWZ5 723 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 FAM20CQ8IXL6 584 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 DCP1BQ8IZD4 617 aaKnown RBP7.16□□□□□ -1.26
HDAC3-209ENST00000486618 DAW1Q8N136 415 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 NKAPQ8N5F7 415 aaKnown RBP7.16□□□□□ -1.26
HDAC3-209ENST00000486618 ANKRD49Q8WVL7 239 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 ZNF75CPQ92670 426 aaPredicted RBP7.16□□□□□ -1.26
HDAC3-209ENST00000486618 TNIP3Q96KP6 325 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 TCF12Q99081 682 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 NUDT16L1Q9BRJ7 211 aaKnown RBP7.16□□□□□ -1.26
HDAC3-209ENST00000486618 ZCWPW1Q9H0M4 648 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 TMEM206Q9H813 350 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 RPF1Q9H9Y2 349 aaKnown RBP7.16□□□□□ -1.26
HDAC3-209ENST00000486618 LIN7BQ9HAP6 207 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 UXTQ9UBK9 157 aaPredicted RBP7.16□□□□□ -1.26
HDAC3-209ENST00000486618 KLK13Q9UKR3 277 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 TCHHQ07283 1943 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 AKAP13Q12802 2813 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 SCN1AP35498 2009 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 GOLGA4Q13439 2230 aaKnown RBP7.15□□□□□ -1.26
HDAC3-209ENST00000486618 APC2O95996 2303 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 SYNJ2BP-COX16A0A087WUM0 186 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 A0A096LPE4 126 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 SPAARA0A1B0GVQ0 90 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 A0A1W2PPZ6 126 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 SYNDIG1LA6NDD5 238 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 LACTBL1A8MY62 500 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 E9PMD0 336 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 RTCAO00442 366 aaKnown RBP7.15□□□□□ -1.26
HDAC3-209ENST00000486618 DTNBO60941 627 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 ASMTLO95671 621 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 USP17L7P0C7H9 530 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 SFTPCP11686 197 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 PLS3P13797 630 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 HMGA1P17096 107 aaKnown RBP7.15□□□□□ -1.26
HDAC3-209ENST00000486618 ENGP17813 658 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 CAPN3P20807 821 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 BCKDHBP21953 392 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 GUCY2CP25092 1073 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 U2AF2P26368 475 aaKnown RBP eCLIP7.15□□□□□ -1.26
HDAC3-209ENST00000486618 NMT1P30419 496 aaKnown RBP7.15□□□□□ -1.26
HDAC3-209ENST00000486618 GRIA4P48058 902 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 RPL10AP62906 217 aaKnown RBP7.15□□□□□ -1.26
HDAC3-209ENST00000486618 MRPS21P82921 87 aaKnown RBP7.15□□□□□ -1.26
HDAC3-209ENST00000486618 TSPY1Q01534 308 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 SEMA3BQ13214 749 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 ORC1Q13415 861 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 CRY1Q16526 586 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 TM4SF20Q53R12 229 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 C2orf27AQ580R0 203 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 KRT79Q5XKE5 535 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 TXNDC8Q6A555 127 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 CXorf57Q6NSI4 855 aaKnown RBP7.15□□□□□ -1.26
HDAC3-209ENST00000486618 RINT1Q6NUQ1 792 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 SLC23A3Q6PIS1 610 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 RABEPKQ7Z6M1 372 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 PIP4P1Q86T03 277 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 TMEM150AQ86TG1 271 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 PDZD3Q86UT5 571 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 NLRP14Q86W24 1093 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 TMEM161BQ8NDZ6 487 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 OR10T2Q8NGX3 314 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 CEP76Q8TAP6 659 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 KIAA1524Q8TCG1 905 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 USP33Q8TEY7 942 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 OSCP1Q8WVF1 389 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 EZH1Q92800 747 aaPredicted RBP7.15□□□□□ -1.26
HDAC3-209ENST00000486618 TRIM63Q969Q1 353 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 BICD1Q96G01 975 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 BAG1Q99933 345 aaPredicted RBP7.15□□□□□ -1.26
HDAC3-209ENST00000486618 SLC39A3Q9BRY0 314 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 MMTAG2Q9BU76 263 aaKnown RBP7.15□□□□□ -1.26
HDAC3-209ENST00000486618 TMPRSS13Q9BYE2 586 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 DNAI2Q9GZS0 605 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 TCF7L2Q9NQB0 619 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 PPARGC1AQ9UBK2 798 aaKnown RBP7.15□□□□□ -1.26
HDAC3-209ENST00000486618 STRIP2Q9ULQ0 834 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 MMP17Q9ULZ9 603 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 MAGED2Q9UNF1 606 aaPredicted RBP7.15□□□□□ -1.26
HDAC3-209ENST00000486618 PCDHB5Q9Y5E4 795 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 AK5Q9Y6K8 562 aa7.15□□□□□ -1.26
HDAC3-209ENST00000486618 KIAA1549LQ6ZVL6 1849 aa7.15□□□□□ -1.27
HDAC3-209ENST00000486618 OBSL1O75147 1896 aa7.15□□□□□ -1.27
HDAC3-209ENST00000486618 PTPRDP23468 1912 aa7.15□□□□□ -1.27
HDAC3-209ENST00000486618 CEP192Q8TEP8 1941 aa7.15□□□□□ -1.27
HDAC3-209ENST00000486618 KNTC1P50748 2209 aa7.15□□□□□ -1.27
HDAC3-209ENST00000486618 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.14□□□□□ -1.27
HDAC3-209ENST00000486618 TRAV19A0A0A6YYK7 116 aa7.14□□□□□ -1.27
HDAC3-209ENST00000486618 MYMKA6NI61 221 aa7.14□□□□□ -1.27
HDAC3-209ENST00000486618 H0YHG0 523 aa7.14□□□□□ -1.27
HDAC3-209ENST00000486618 PIRO00625 290 aa7.14□□□□□ -1.27
HDAC3-209ENST00000486618 CYB561D2O14569 222 aa7.14□□□□□ -1.27
HDAC3-209ENST00000486618 PPEF2O14830 753 aa7.14□□□□□ -1.27
HDAC3-209ENST00000486618 OGTO15294 1046 aa7.14□□□□□ -1.27
HDAC3-209ENST00000486618 RASA4O43374 803 aa7.14□□□□□ -1.27
HDAC3-209ENST00000486618 OPHN1O60890 802 aa7.14□□□□□ -1.27
HDAC3-209ENST00000486618 TIPRLO75663 272 aa7.14□□□□□ -1.27
HDAC3-209ENST00000486618 GFPT2O94808 682 aa7.14□□□□□ -1.27
HDAC3-209ENST00000486618 NFATC1O95644 943 aa7.14□□□□□ -1.27
HDAC3-209ENST00000486618 DLGAP3O95886 979 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms