RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 TXNRD2Q9NNW7 524 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 RUVBL2Q9Y230 463 aaKnown RBP11.27□□□□□ -0.61
HDAC6-228ENST00000486227 R3HDM2Q9Y2K5 976 aaKnown RBP11.27□□□□□ -0.61
HDAC6-228ENST00000486227 SYNCRIPO60506 623 aaKnown RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 CHRNB2P17787 502 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 FLT3P36888 993 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 SCNN1BP51168 640 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 MAPRE2Q15555 327 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 ILDR2Q71H61 639 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 ZNF467Q7Z7K2 595 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 FAM81AQ8TBF8 368 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 EIF2AQ9BY44 585 aaKnown RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 LHX5Q9H2C1 402 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 NRDE2Q9H7Z3 1164 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 CD274Q9NZQ7 290 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 VPS28Q9UK41 221 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 CDH9Q9ULB4 789 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 PRR23AA6NEV1 266 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 ADCY6O43306 1168 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 EFCAB14O75071 495 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 DUSP11O75319 330 aaKnown RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 CILPO75339 1184 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 ARIH2O95376 493 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 BRCC3P46736 316 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 BTKQ06187 659 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 CDH17Q12864 832 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 NOMO2Q5JPE7 1267 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 TLCD1Q96CP7 247 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 TMA16Q96EY4 203 aaKnown RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 GORASP1Q9BQQ3 440 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 ETNK2Q9NVF9 386 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 COQ4Q9Y3A0 265 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 ADGRA3Q8IWK6 1321 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 C2orf81A6NN90 581 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 RTN3O95197 1032 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 WEE1P30291 646 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 OR1E1P30953 314 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 CSE1LP55060 971 aaKnown RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 ASTE1Q2TB18 679 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 CCDC149Q6ZUS6 474 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 NETO2Q8NC67 525 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 ZNF398Q8TD17 642 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 ILKAPQ9H0C8 392 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 MMADHCQ9H3L0 296 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 WARS2Q9UGM6 360 aaKnown RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 NUP98P52948 1817 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 ENTPD5O75356 428 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 HOXD13P35453 343 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 PPM1AP35813 382 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 TMED10P49755 219 aaKnown RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 RENBPP51606 427 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 STARD3Q14849 445 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 KBTBD12Q3ZCT8 623 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 PABPC1LQ4VXU2 614 aaKnown RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 TMEM259Q4ZIN3 620 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 MON1BQ7L1V2 547 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 TFAP2BQ92481 460 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 ZNF75CPQ92670 426 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 ART4Q93070 314 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 UNKQ9C0B0 810 aaKnown RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 UBE2OQ9C0C9 1292 aaKnown RBP11.26□□□□□ -0.61
HDAC6-228ENST00000486227 LRMDAQ9H2I8 198 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 ACOT9Q9Y305 439 aa11.26□□□□□ -0.61
HDAC6-228ENST00000486227 SF3B1O75533 1304 aaKnown RBP eCLIP11.25□□□□□ -0.617e-9■■■■■ 132.1
HDAC6-228ENST00000486227 HACD1B0YJ81 288 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 GOLGA8TH3BQL2 631 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 FCHO1O14526 889 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 BANF1O75531 89 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 SUPT7LO94864 414 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 GOT1P17174 413 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 AGAP9Q5VTM2 703 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 LRRC8EQ6NSJ5 796 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 LCLAT1Q6UWP7 414 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 SZRD1Q7Z422 152 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 PTAR1Q7Z6K3 402 aaPredicted RBP11.25□□□□□ -0.61
HDAC6-228ENST00000486227 BRI3BPQ8WY22 251 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 MYLPFQ96A32 169 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 PRDM12Q9H4Q4 367 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 CYP4F12Q9HCS2 524 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 CRLS1Q9UJA2 301 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 TRHDEQ9UKU6 1024 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 LTBP3Q9NS15 1303 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.25□□□□□ -0.61
HDAC6-228ENST00000486227 LZTS3O60299 673 aaPredicted RBP11.25□□□□□ -0.61
HDAC6-228ENST00000486227 MGEA5O60502 916 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 TSPAN3O60637 253 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 DGKIO75912 1065 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 MTA1Q13330 715 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 LZTR1Q8N653 840 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 RNF217Q8TC41 542 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 UROC1Q96N76 676 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 CDYLQ9Y232 598 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 COMMD3-BMI1R4GMX3 469 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 LAMB4A4D0S4 1761 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 TLL1O43897 1013 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 MYO1DO94832 1006 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 C22orf31O95567 290 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 APOA4P06727 396 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 ITGAVP06756 1048 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 CPA3P15088 417 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms