RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, human

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS41-213	ENST00000485955	SLC8A2	Q9UPR5	921 aa		4.38	□□□□□ -1.71
VPS41-213	ENST00000485955	LZTS1	Q9Y250	596 aa		4.38	□□□□□ -1.71
VPS41-213	ENST00000485955	COPG1	Q9Y678	874 aa	Known RBP	4.38	□□□□□ -1.71
VPS41-213	ENST00000485955	TBC1D3D	A0A087WVF3	549 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	TBC1D3I	A0A087WXS9	549 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	TBC1D3E	A0A087X179	549 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	TBC1D3K	A0A087X1G2	549 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	TBC1D3B	A6NDS4	549 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	TBC1D3F	A6NER0	549 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	GOLGA6L3	A6NEY3	463 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	FAM90A8P	A6NJQ4	464 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	C3orf70	A6NLC5	250 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	TBC1D3L	B9A6J9	549 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	FAM90A13P	P0C7W8	464 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	FAM90A24P	P0C7X0	464 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	TBC1D3H	P0C7X1	549 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	ARRB2	P32121	409 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	GALNT1	Q10472	559 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	PTK2B	Q14289	1009 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	PFKFB4	Q16877	469 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	TRIM60	Q495X7	471 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	C10orf76	Q5T2E6	689 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	TBC1D3G	Q6DHY5	549 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	TBC1D3C	Q6IPX1	549 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	TMEM88	Q6PEY1	159 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	KIAA1324	Q6UXG2	1013 aa	Known RBP	4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	CYB5R4	Q7L1T6	521 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	GATAD2A	Q86YP4	633 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	TBC1D3	Q8IZP1	549 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	ZNF527	Q8NB42	609 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	ACRBP	Q8NEB7	543 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	B4GALNT2	Q8NHY0	566 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	MAP6D1	Q9H9H5	199 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	ARFGAP3	Q9NP61	516 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	LRP12	Q9Y561	859 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955	PCDHA10	Q9Y5I2	948 aa		4.37	□□□□□ -1.71
VPS41-213	ENST00000485955		A0A087WV62	115 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	AGAP5	A6NIR3	686 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955		H0YGN5	161 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	NEURL1	O76050	574 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	HOXB6	P17509	224 aa	Known RBP	4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	TBXAS1	P24557	533 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	CDKN2A	P42771	156 aa	Known RBP	4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	PNLIPRP1	P54315	467 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	ADPRH	P54922	357 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	ZBTB16	Q05516	673 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	RNASEL	Q05823	741 aa	Known RBP	4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	ERV3-1	Q14264	604 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	ARL13A	Q5H913	290 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	SYCP2L	Q5T4T6	812 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	HMGB4	Q8WW32	186 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	WASF1	Q92558	559 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	CENPI	Q92674	756 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	RSC1A1	Q92681	617 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	CLMN	Q96JQ2	1002 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	WDR12	Q9GZL7	423 aa	Known RBP	4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	HIPK2	Q9H2X6	1198 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	MRPL44	Q9H9J2	332 aa	Known RBP	4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	ZNF304	Q9HCX3	659 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	NFU1	Q9UMS0	254 aa		4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	MAGED2	Q9UNF1	606 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS41-213	ENST00000485955	KCNJ18	B7U540	433 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	MCIDAS	D6RGH6	385 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	GTPBP1	O00178	669 aa	Known RBP	4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	TNFRSF13B	O14836	293 aa	Predicted RBP	4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	LARGE1	O95461	756 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	IFNA2	P01563	188 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	IFIT2	P09913	472 aa	Known RBP	4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	PDIA3	P30101	505 aa	Known RBP	4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	HOXA11	P31270	313 aa	Predicted RBP	4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	PMPCA	Q10713	525 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	SEMA3A	Q14563	771 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	KLHL22	Q53GT1	634 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	ENTPD8	Q5MY95	495 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	TTC39A	Q5SRH9	613 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	LVRN	Q6Q4G3	990 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	TRAPPC11	Q7Z392	1133 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	KDELC2	Q7Z4H8	507 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	MORC1	Q86VD1	984 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	SCAMP5	Q8TAC9	235 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	FAM110D	Q8TAY7	271 aa	Predicted RBP	4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	EID2B	Q96D98	161 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	KATNAL1	Q9BW62	490 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	MAGEH1	Q9H213	219 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	SEPSECS	Q9HD40	501 aa	Known RBP	4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	SIRT3	Q9NTG7	399 aa	Predicted RBP	4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	DAPP1	Q9UN19	280 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	TNFSF13B	Q9Y275	285 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	DTX4	Q9Y2E6	619 aa		4.35	□□□□□ -1.71
VPS41-213	ENST00000485955	MDM4	O15151	490 aa		4.34	□□□□□ -1.71
VPS41-213	ENST00000485955	MSI1	O43347	362 aa	Known RBP	4.34	□□□□□ -1.71
VPS41-213	ENST00000485955	HEXIM1	O94992	359 aa	Known RBP	4.34	□□□□□ -1.71
VPS41-213	ENST00000485955	CYP21A2	P08686	494 aa		4.34	□□□□□ -1.71
VPS41-213	ENST00000485955	SETSIP	P0DME0	302 aa		4.34	□□□□□ -1.71
VPS41-213	ENST00000485955	GALNT3	Q14435	633 aa		4.34	□□□□□ -1.71
VPS41-213	ENST00000485955	WASHC2D	Q5SRD0	308 aa		4.34	□□□□□ -1.71
VPS41-213	ENST00000485955	UBAP2	Q5T6F2	1119 aa	Known RBP	4.34	□□□□□ -1.71
VPS41-213	ENST00000485955	LIN54	Q6MZP7	749 aa		4.34	□□□□□ -1.71
VPS41-213	ENST00000485955	TOGARAM2	Q6ZUX3	1019 aa		4.34	□□□□□ -1.71
VPS41-213	ENST00000485955	CTU1	Q7Z7A3	348 aa	Known RBP	4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms