RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 FSCN3Q9NQT6 498 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 DDIT4Q9NX09 232 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 ADAMTS1Q9UHI8 967 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 EIF2B4Q9UI10 523 aaKnown RBP12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 PAXBP1Q9Y5B6 917 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 TMEM131Q92545 1883 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 DOCK4Q8N1I0 1966 aa12.54□□□□□ -0.4
SQSTM1-207ENST00000481335 WDFY3Q8IZQ1 3526 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 FAM221BA6H8Z2 402 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 DAB1O75553 588 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 CD27P26842 260 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 CDH5P33151 784 aaPredicted RBP12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 NOS2P35228 1153 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 ELAVL3Q14576 367 aaKnown RBP12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 VWA3BQ502W6 1294 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 RAP1GAP2Q684P5 730 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 NAXDQ8IW45 347 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 FAM71AQ8IYT1 594 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 DEFB106AQ8N104 65 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 WDTC1Q8N5D0 677 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 ZNF366Q8N895 744 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 KDF1Q8NAX2 398 aaPredicted RBP12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 TUBGCP2Q9BSJ2 902 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 SCNM1Q9BWG6 230 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 SIX2Q9NPC8 291 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 ACP6Q9NPH0 428 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 DNAJC12Q9UKB3 198 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 STAP1Q9ULZ2 295 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 ERVW-1Q9UQF0 538 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 PCDHB9Q9Y5E1 797 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 PLXNA2O75051 1894 aa12.53□□□□□ -0.4
SQSTM1-207ENST00000481335 FLRT2O43155 660 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 DFNA5O60443 496 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 SIN3BO75182 1162 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 ADH1BP00325 375 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 EEF1GP26641 437 aaKnown RBP12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 SLC6A3Q01959 620 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 SUZ12Q15022 739 aaKnown RBP12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 TRIP6Q15654 476 aaKnown RBP12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 CST6Q15828 149 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 C5orf22Q49AR2 442 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 FSCBQ5H9T9 825 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 BRMS1LQ5PSV4 323 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 C9orf64Q5T6V5 341 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 DBX2Q6ZNG2 339 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 CLEC17AQ6ZS10 378 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 FAM183BPQ6ZVS7 135 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 FAM124AQ86V42 546 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 CCAR2Q8N163 923 aaKnown RBP12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 CFAP52Q8N1V2 620 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 TMEM35BQ8NCS4 154 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 MSANTD4Q8NCY6 345 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 SNX19Q92543 992 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 SKA1Q96BD8 255 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 BIRC7Q96CA5 298 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 MYEOVQ96EZ4 313 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 PGAP3Q96FM1 320 aaPredicted RBP12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 TMEM121BQ9BXQ6 578 aaPredicted RBP12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 NUP62CLQ9H1M0 184 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 C6orf106Q9H6K1 298 aaPredicted RBP12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 GAREM1Q9H706 876 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 SYNCQ9H7C4 482 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 TM7SF3Q9NS93 570 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 FBXL12Q9NXK8 326 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 XPO7Q9UIA9 1087 aaKnown RBP12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 MSRB2Q9Y3D2 182 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 DAAM1Q9Y4D1 1078 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 CFAP47Q6ZTR5 3102 aa12.52□□□□□ -0.41
SQSTM1-207ENST00000481335 FAM208BQ5VWN6 2430 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 COL5A1P20908 1838 aaPredicted RBP12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 LRRC72A6NJI9 287 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 FOXN3O00409 490 aaPredicted RBP12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 ALOX15BO15296 676 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 CBFA2T3O75081 653 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 CLDN11O75508 207 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 LSM8O95777 96 aaKnown RBP12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 F9P00740 461 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 C5AR1P21730 350 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 CLCN1P35523 988 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 GABRB2P47870 512 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 RACK1P63244 317 aaKnown RBP12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 DPCR1Q3MIW9 517 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 PTPN20Q4JDL3 420 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 MIIPQ5JXC2 388 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 KIAA0895LQ68EN5 471 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 OR6B2Q6IFH4 312 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 LRSAM1Q6UWE0 723 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 ARCQ7LC44 396 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 DSG4Q86SJ6 1040 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 SLC47A2Q86VL8 602 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 PASD1Q8IV76 773 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 DHX40Q8IX18 779 aaKnown RBP12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 OR2I1PQ8NGU4 316 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 OR2T34Q8NGX1 318 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 ADAMTS14Q8WXS8 1223 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 GATA6Q92908 595 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 RNF34Q969K3 372 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 IGSF8Q969P0 613 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 FAM131CQ96AQ9 280 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 RPRD1AQ96P16 312 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms