RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 CDPF1Q6NVV7 123 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 PPP1R2P3Q6NXS1 205 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 LCLAT1Q6UWP7 414 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 TRIM72Q6ZMU5 477 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 PDZD4Q76G19 769 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-209ENST00000479532 TMC6Q7Z403 805 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 CNGA4Q8IV77 575 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 FAM71AQ8IYT1 594 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 FUKQ8N0W3 1084 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 LILRB2Q8N423 598 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 C12orf29Q8N999 325 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 ANKRD52Q8NB46 1076 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 VN1R2Q8NFZ6 395 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 ZSCAN18Q8TBC5 510 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-209ENST00000479532 SMG7Q92540 1137 aaKnown RBP6.48□□□□□ -1.37
SF3B1-209ENST00000479532 SPATA17Q96L03 361 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 DHRS1Q96LJ7 313 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 NECTIN4Q96NY8 510 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 DUSP16Q9BY84 665 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 B3GNT5Q9BYG0 378 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 RHOBTB2Q9BYZ6 727 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 ZNF518BQ9C0D4 1074 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 SEMA6CQ9H3T2 930 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 FBXO44Q9H4M3 255 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 L2HGDHQ9H9P8 463 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 PNPLA8Q9NP80 782 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 ASAH2Q9NR71 780 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 SEPT11Q9NVA2 429 aaKnown RBP6.48□□□□□ -1.37
SF3B1-209ENST00000479532 TMLHEQ9NVH6 421 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 FAM86C1Q9NVL1 165 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 COMMD8Q9NX08 183 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 PFDN2Q9UHV9 154 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 TSPAN16Q9UKR8 245 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 CAPN11Q9UMQ6 739 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.48□□□□□ -1.37
SF3B1-209ENST00000479532 NME7Q9Y5B8 376 aa6.48□□□□□ -1.37
SF3B1-209ENST00000479532 BZW2Q9Y6E2 419 aaKnown RBP6.48□□□□□ -1.37
SF3B1-209ENST00000479532 ATXN2Q99700 1313 aaKnown RBP6.48□□□□□ -1.37
SF3B1-209ENST00000479532 PRRC2BQ5JSZ5 2229 aaKnown RBP6.48□□□□□ -1.37
SF3B1-209ENST00000479532 SLC38A8A6NNN8 435 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 AKR1B15C9JRZ8 316 aaPredicted RBP6.47□□□□□ -1.37
SF3B1-209ENST00000479532 F8VP50 259 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 O00370 1275 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 XPO1O14980 1071 aaKnown RBP6.47□□□□□ -1.37
SF3B1-209ENST00000479532 EPHB6O15197 1021 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 NRDCO43847 1150 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 TBX10O75333 385 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 CLEC3AO75596 197 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 RFPL2O75678 378 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 ADCY5O95622 1261 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 LSM8O95777 96 aaKnown RBP6.47□□□□□ -1.37
SF3B1-209ENST00000479532 GLP2RO95838 553 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 CYP11B1P15538 503 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 TNFAIP3P21580 790 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 KCNA5P22460 613 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 CDC25CP30307 473 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 ACADSBP45954 432 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 PPP3CCP48454 512 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 SARNPP82979 210 aaKnown RBP6.47□□□□□ -1.37
SF3B1-209ENST00000479532 KLHL30Q0D2K2 578 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 SMAD4Q13485 552 aaKnown RBP6.47□□□□□ -1.37
SF3B1-209ENST00000479532 PTPN21Q16825 1174 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 PABPC1LQ4VXU2 614 aaKnown RBP6.47□□□□□ -1.37
SF3B1-209ENST00000479532 ARHGAP15Q53QZ3 475 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 EGFLAMQ63HQ2 1017 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 DPY19L2P1Q6NXN4 242 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 TMC5Q6UXY8 1006 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 ZNF662Q6ZS27 426 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 CLEC20AQ6ZU45 233 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 DENND5BQ6ZUT9 1274 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 SPATC1Q76KD6 591 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 GPR149Q86SP6 731 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 SLC47A2Q86VL8 602 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 NUP93Q8N1F7 819 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 SIX6OS1Q8N1H7 587 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 ARHGAP18Q8N392 663 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 TMEM35BQ8NCS4 154 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 STKLD1Q8NE28 680 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 PDZD8Q8NEN9 1154 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 ST13P5Q8NFI4 369 aaPredicted RBP6.47□□□□□ -1.37
SF3B1-209ENST00000479532 FBLIM1Q8WUP2 373 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 ZNF606Q8WXB4 792 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 SYN2Q92777 582 aaPredicted RBP6.47□□□□□ -1.37
SF3B1-209ENST00000479532 GOLGA1Q92805 767 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 PSMG2Q969U7 264 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 SLITRK1Q96PX8 696 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 GPR88Q9GZN0 384 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 ADAM7Q9H2U9 754 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 SYNCQ9H7C4 482 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 LRRC4Q9HBW1 653 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 CSNK1G1Q9HCP0 422 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 AIPL1Q9NZN9 384 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 THEGQ9P2T0 379 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 IMPACTQ9P2X3 320 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 SUCOQ9UBS9 1254 aaKnown RBP6.47□□□□□ -1.37
SF3B1-209ENST00000479532 ZMYM5Q9UJ78 669 aa6.47□□□□□ -1.37
SF3B1-209ENST00000479532 AJAP1Q9UKB5 411 aaPredicted RBP6.47□□□□□ -1.37
SF3B1-209ENST00000479532 MAGED2Q9UNF1 606 aaPredicted RBP6.47□□□□□ -1.37
SF3B1-209ENST00000479532 RRP15Q9Y3B9 282 aaKnown RBP6.47□□□□□ -1.37
SF3B1-209ENST00000479532 PATJQ8NI35 1801 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms