RNA–Protein interactions for RNA: ENST00000478582.5

CCM2-211, Transcript of CCM2 scaffold protein, human

TSL 3

Gene CCM2, Length 937 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-211	ENST00000478582	CHRM1	P11229	460 aa	Predicted RBP	27.6	■■■□□ 2.01
CCM2-211	ENST00000478582	L1CAM	P32004	1257 aa		27.6	■■■□□ 2.01
CCM2-211	ENST00000478582	ARHGAP25	P42331	645 aa		27.6	■■■□□ 2.01
CCM2-211	ENST00000478582	CDH4	P55283	916 aa		27.6	■■■□□ 2.01
CCM2-211	ENST00000478582	ERMARD	Q5T6L9	678 aa		27.6	■■■□□ 2.01
CCM2-211	ENST00000478582	PKN3	Q6P5Z2	889 aa		27.6	■■■□□ 2.01
CCM2-211	ENST00000478582	ANKS1B	Q7Z6G8	1248 aa		27.6	■■■□□ 2.01
CCM2-211	ENST00000478582	CCDC117	Q8IWD4	279 aa	Predicted RBP	27.6	■■■□□ 2.01
CCM2-211	ENST00000478582	SFTPA1	Q8IWL2	248 aa		27.6	■■■□□ 2.01
CCM2-211	ENST00000478582	WFDC5	Q8TCV5	224 aa		27.6	■■■□□ 2.01
CCM2-211	ENST00000478582	RETREG1	Q9H6L5	497 aa		27.6	■■■□□ 2.01
CCM2-211	ENST00000478582	REXO2	Q9Y3B8	237 aa	Known RBP	27.6	■■■□□ 2.01
CCM2-211	ENST00000478582	RIF1	Q5UIP0	2472 aa	Known RBP	27.6	■■■□□ 2.01
CCM2-211	ENST00000478582	PTPRZ1	P23471	2315 aa	Predicted RBP	27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	PRRT4	C9JH25	899 aa		27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	PRPSAP2	O60256	369 aa		27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	PROSC	O94903	275 aa		27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	HOXA6	P31267	233 aa		27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	KIR2DL1	P43626	348 aa	Predicted RBP	27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	IRAK1	P51617	712 aa		27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	HADHB	P55084	474 aa	Known RBP	27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	MRPS21	P82921	87 aa	Known RBP	27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	GEN1	Q17RS7	908 aa		27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	CARNMT1	Q8N4J0	409 aa		27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	CCDC112	Q8NEF3	446 aa		27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	WFIKKN2	Q8TEU8	576 aa		27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	PEBP4	Q96S96	227 aa		27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	MAGEB5	Q9BZ81	275 aa		27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	PCSK1N	Q9UHG2	260 aa		27.59	■■■□□ 2.01
CCM2-211	ENST00000478582	FAM186A	A6NE01	2351 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582		A0A0A6YYK5	440 aa	Predicted RBP	27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	FAM72C	H0Y354	149 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582		H0Y626	953 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	TIMM44	O43615	452 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	SRGAP2	O75044	1071 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	KRT83	P78385	493 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	SEMA3B	Q13214	749 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	CDH18	Q13634	790 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	EIF4H	Q15056	248 aa	Known RBP	27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	BOLA3	Q53S33	107 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	FAM72A	Q5TYM5	149 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	FAM72D	Q6L9T8	149 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	FAM72B	Q86X60	149 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	LRRC8A	Q8IWT6	810 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	USP33	Q8TEY7	942 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	ZYG11B	Q9C0D3	744 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	EPC1	Q9H2F5	836 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	ABCB8	Q9NUT2	735 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	KIAA1522	Q9P206	1035 aa	Predicted RBP	27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	GGA2	Q9UJY4	613 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	TBC1D30	Q9Y2I9	924 aa		27.58	■■■□□ 2.01
CCM2-211	ENST00000478582	DMD	P11532	3685 aa		27.57	■■■□□ 2
CCM2-211	ENST00000478582	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	27.57	■■■□□ 2
CCM2-211	ENST00000478582	CNTN5	O94779	1100 aa		27.57	■■■□□ 2
CCM2-211	ENST00000478582	LRIG2	O94898	1065 aa		27.57	■■■□□ 2
CCM2-211	ENST00000478582	PABPC1	P11940	636 aa	Known RBP	27.57	■■■□□ 2
CCM2-211	ENST00000478582	MAN1A1	P33908	653 aa		27.57	■■■□□ 2
CCM2-211	ENST00000478582	OXCT1	P55809	520 aa		27.57	■■■□□ 2
CCM2-211	ENST00000478582	ZNF177	Q13360	481 aa	Predicted RBP	27.57	■■■□□ 2
CCM2-211	ENST00000478582	SLC12A1	Q13621	1099 aa		27.57	■■■□□ 2
CCM2-211	ENST00000478582	HSF5	Q4G112	596 aa	Predicted RBP	27.57	■■■□□ 2
CCM2-211	ENST00000478582	ALF	Q53S48	1182 aa		27.57	■■■□□ 2
CCM2-211	ENST00000478582	FSCB	Q5H9T9	825 aa		27.57	■■■□□ 2
CCM2-211	ENST00000478582	CIR1	Q86X95	450 aa	Predicted RBP	27.57	■■■□□ 2
CCM2-211	ENST00000478582	AHI1	Q8N157	1196 aa		27.57	■■■□□ 2
CCM2-211	ENST00000478582	SNRNP25	Q9BV90	132 aa	Known RBP	27.57	■■■□□ 2
CCM2-211	ENST00000478582	AP4E1	Q9UPM8	1137 aa		27.57	■■■□□ 2
CCM2-211	ENST00000478582	IL1R2	P27930	398 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	CD70	P32970	193 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	HTR7	P34969	479 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	FNTB	P49356	437 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	DMWD	Q09019	674 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	LMAN2	Q12907	356 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	DMC1	Q14565	340 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	DAB2IP	Q5VWQ8	1189 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	TMEM215	Q68D42	235 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	CXorf57	Q6NSI4	855 aa	Known RBP	27.56	■■■□□ 2
CCM2-211	ENST00000478582	LONP2	Q86WA8	852 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	PYROXD2	Q8N2H3	581 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	ACRBP	Q8NEB7	543 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	ANP32B	Q92688	251 aa	Known RBP	27.56	■■■□□ 2
CCM2-211	ENST00000478582	ELOVL2	Q9NXB9	296 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	MPP6	Q9NZW5	540 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	ZNF212	Q9UDV6	495 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	HCN2	Q9UL51	889 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	SLC8A2	Q9UPR5	921 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	NEU3	Q9UQ49	428 aa		27.56	■■■□□ 2
CCM2-211	ENST00000478582	RCCD1	A6NED2	376 aa		27.55	■■■□□ 2
CCM2-211	ENST00000478582	BTNL10	A8MVZ5	291 aa		27.55	■■■□□ 2
CCM2-211	ENST00000478582	PJA2	O43164	708 aa		27.55	■■■□□ 2
CCM2-211	ENST00000478582	HNRNPL	P14866	589 aa	Known RBP eCLIP	27.55	■■■□□ 2	1e-7	■□□□□ 10.3
CCM2-211	ENST00000478582	HOXC13	P31276	330 aa		27.55	■■■□□ 2
CCM2-211	ENST00000478582	VAV2	P52735	878 aa		27.55	■■■□□ 2
CCM2-211	ENST00000478582	PLK1	P53350	603 aa		27.55	■■■□□ 2
CCM2-211	ENST00000478582	SLC25A11	Q02978	314 aa	Known RBP	27.55	■■■□□ 2
CCM2-211	ENST00000478582	E2F5	Q15329	346 aa		27.55	■■■□□ 2
CCM2-211	ENST00000478582	EMC10	Q5UCC4	262 aa		27.55	■■■□□ 2
CCM2-211	ENST00000478582	SETD3	Q86TU7	594 aa	Predicted RBP	27.55	■■■□□ 2
CCM2-211	ENST00000478582	ADIPOR2	Q86V24	386 aa		27.55	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms