RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CPQQ9Y646 472 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 MYO18AQ92614 2054 aaKnown RBP7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 GVINP1Q7Z2Y8 2422 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 DCHS1Q96JQ0 3298 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 WDR87Q6ZQQ6 2873 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 FAM92AA1XBS5 289 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 K7ESF4 209 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 ENC1O14682 589 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 PSMA7O14818 248 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 COCHO43405 550 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 CILPO75339 1184 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 EGFP01133 1207 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 CD58P19256 250 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 ADORA2BP29275 332 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 HOXA6P31267 233 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 CNR2P34972 360 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 PPP1R2P41236 205 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 GALK1P51570 392 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 MAP3K7CLP57077 242 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 ZXDBP98169 803 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 FKBP3Q00688 224 aaKnown RBP7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 LRRC63Q05C16 580 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 DCAF17Q5H9S7 520 aaPredicted RBP7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 HECTD3Q5T447 861 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 TCERG1LQ5VWI1 586 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 SNX30Q5VWJ9 437 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 ANKRD40Q6AI12 368 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 FILIP1Q7Z7B0 1213 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 LONP2Q86WA8 852 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 ELOA2Q8IYF1 753 aaPredicted RBP7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 KIAA2013Q8IYS2 634 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 TTC39CQ8N584 583 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 C12orf29Q8N999 325 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 FBXL13Q8NEE6 735 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 ZMIZ2Q8NF64 920 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 CCDC26Q8TAB7 109 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 CD101Q93033 1021 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 CHFRQ96EP1 664 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 EEF2KMTQ96G04 330 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 HNRNPABQ99729 332 aaKnown RBP7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 SMOQ99835 787 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 NACA2Q9H009 215 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 LINC00597Q9H2U6 94 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 FAM124BQ9H5Z6 455 aaPredicted RBP7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 PNPLA8Q9NP80 782 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 TLR8Q9NR97 1041 aaKnown RBP7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 RAB20Q9NX57 234 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 SMPD4Q9NXE4 827 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 IL37Q9NZH6 218 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 GMIPQ9P107 970 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 CFAP97Q9P2B7 532 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 TBC1D14Q9P2M4 693 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 GMEB2Q9UKD1 530 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 SLC8A2Q9UPR5 921 aa7.17□□□□□ -1.26
CCDC88A-213ENST00000476903 ZNF292O60281 2723 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 E2F8A0AVK6 867 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 CHURC1-FNTBB4DL54 471 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 BEST1O76090 585 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 ZDHHC11BP0C7U3 371 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 FNTBP49356 437 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 PMS1P54277 932 aaKnown RBP7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 DMWDQ09019 674 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 NKG7Q16617 165 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 HEATR6Q6AI08 1181 aaKnown RBP7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 LAIR1Q6GTX8 287 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 CLEC20AQ6ZU45 233 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 WDR5BQ86VZ2 330 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 ZC3H3Q8IXZ2 948 aaKnown RBP7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 DCLK2Q8N568 766 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 SEMA4DQ92854 862 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 ERCC4Q92889 916 aaPredicted RBP7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 OTUB2Q96DC9 234 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 CYFIP2Q96F07 1278 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 DHTKD1Q96HY7 919 aaPredicted RBP7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 TWNKQ96RR1 684 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 C2orf42Q9NWW7 574 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 CHORDC1Q9UHD1 332 aaPredicted RBP7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 TMEM59LQ9UK28 342 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 SCML2Q9UQR0 700 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 SH3BP1Q9Y3L3 701 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 SPTBN4Q9H254 2564 aa7.16□□□□□ -1.26
CCDC88A-213ENST00000476903 GPR179Q6PRD1 2367 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 CCDC163A0A0D9SF12 145 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 MYOCOSA0A1B0GUC4 107 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 BICDL2A1A5D9 508 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 TRIM49BA6NDI0 452 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 HHLA1C9JL84 531 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 TLR5O60602 858 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 CYP17A1P05093 508 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 RAC2P15153 192 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 ACO1P21399 889 aaKnown RBP7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 OPRD1P41143 372 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 EIF2DP41214 584 aaKnown RBP7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 ID4P47928 161 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 YWHAEP62258 255 aaKnown RBP7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 GOLGA8FQ08AF8 430 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 GOLGA8DPQ0D2H9 430 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 SIM2Q14190 667 aaPredicted RBP7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 INPP5AQ14642 412 aa7.15□□□□□ -1.26
CCDC88A-213ENST00000476903 DHCR24Q15392 516 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms