RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 OR6B2Q6IFH4 312 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 TCTN3Q6NUS6 607 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 GCNT7Q6ZNI0 430 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 ASB18Q6ZVZ8 466 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 HS2ST1Q7LGA3 356 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 DSG4Q86SJ6 1040 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 FAM217AQ8IXS0 508 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 TRIM22Q8IYM9 498 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 FAM177A1Q8N128 213 aaPredicted RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 EFCAB3Q8N7B9 438 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 LRRC52Q8N7C0 313 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.01□□□□□ -1.61
USP4-209ENST00000475873 Q8NA96 180 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 APOBEC4Q8WW27 367 aaKnown RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 GOLGA1Q92805 767 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 KLK6Q92876 244 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 BICD1Q96G01 975 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 KLHDC7BQ96G42 594 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 SLC45A3Q96JT2 553 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 HEXIM2Q96MH2 286 aaKnown RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 CATSPER2Q96P56 530 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 EPAS1Q99814 870 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 OMDQ99983 421 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 DUSP23Q9BVJ7 150 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 CALN1Q9BXU9 219 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 ANO2Q9NQ90 1003 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 ABCB8Q9NUT2 735 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 EHD2Q9NZN4 543 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 LSM7Q9UK45 103 aaKnown RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 INTS6Q9UL03 887 aaKnown RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 AGO1Q9UL18 857 aaKnown RBP5.01□□□□□ -1.61
USP4-209ENST00000475873 SCML1Q9UN30 329 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 NCKAP1Q9Y2A7 1128 aa5.01□□□□□ -1.61
USP4-209ENST00000475873 TBC1D3DA0A087WVF3 549 aa5□□□□□ -1.61
USP4-209ENST00000475873 TBC1D3IA0A087WXS9 549 aa5□□□□□ -1.61
USP4-209ENST00000475873 TBC1D3EA0A087X179 549 aa5□□□□□ -1.61
USP4-209ENST00000475873 TBC1D3KA0A087X1G2 549 aa5□□□□□ -1.61
USP4-209ENST00000475873 TBC1D3FA6NER0 549 aaPredicted RBP5□□□□□ -1.61
USP4-209ENST00000475873 ZNF891A8MT65 544 aaPredicted RBP5□□□□□ -1.61
USP4-209ENST00000475873 KIAA1324LA8MWY0 1029 aaPredicted RBP5□□□□□ -1.61
USP4-209ENST00000475873 TTC34A8MYJ7 566 aa5□□□□□ -1.61
USP4-209ENST00000475873 TBC1D3LB9A6J9 549 aa5□□□□□ -1.61
USP4-209ENST00000475873 HHLA1C9JL84 531 aa5□□□□□ -1.61
USP4-209ENST00000475873 PRAMEF26H0Y7S4 382 aa5□□□□□ -1.61
USP4-209ENST00000475873 SLC31A1O15431 190 aa5□□□□□ -1.61
USP4-209ENST00000475873 SPINT1O43278 529 aa5□□□□□ -1.61
USP4-209ENST00000475873 PLRG1O43660 514 aaKnown RBP5□□□□□ -1.61
USP4-209ENST00000475873 CNTN5O94779 1100 aa5□□□□□ -1.61
USP4-209ENST00000475873 C4BPAP04003 597 aaKnown RBP5□□□□□ -1.61
USP4-209ENST00000475873 CELA2BP08218 269 aaPredicted RBP5□□□□□ -1.61
USP4-209ENST00000475873 FURINP09958 794 aa5□□□□□ -1.61
USP4-209ENST00000475873 TBC1D3HP0C7X1 549 aa5□□□□□ -1.61
USP4-209ENST00000475873 PABPC1P11940 636 aaKnown RBP5□□□□□ -1.61
USP4-209ENST00000475873 VAV1P15498 845 aa5□□□□□ -1.61
USP4-209ENST00000475873 NME1P15531 152 aaKnown RBP5□□□□□ -1.61
USP4-209ENST00000475873 MUTP22033 750 aa5□□□□□ -1.61
USP4-209ENST00000475873 CORO1AP31146 461 aaKnown RBP5□□□□□ -1.61
USP4-209ENST00000475873 CD70P32970 193 aa5□□□□□ -1.61
USP4-209ENST00000475873 MCM7P33993 719 aa5□□□□□ -1.61
USP4-209ENST00000475873 ATP5C1P36542 298 aaKnown RBP5□□□□□ -1.61
USP4-209ENST00000475873 CTSOP43234 321 aaPredicted RBP5□□□□□ -1.61
USP4-209ENST00000475873 TRAPPC10P48553 1259 aa5□□□□□ -1.61
USP4-209ENST00000475873 MAPK10P53779 464 aa5□□□□□ -1.61
USP4-209ENST00000475873 TFAMQ00059 246 aaKnown RBP5□□□□□ -1.61
USP4-209ENST00000475873 SFSWAPQ12872 951 aaKnown RBP5□□□□□ -1.61
USP4-209ENST00000475873 NAA30Q147X3 362 aaPredicted RBP5□□□□□ -1.61
USP4-209ENST00000475873 MAPRE1Q15691 268 aaKnown RBP5□□□□□ -1.61
USP4-209ENST00000475873 INPP5JQ15735 1006 aaPredicted RBP5□□□□□ -1.61
USP4-209ENST00000475873 ARHGAP44Q17R89 818 aa5□□□□□ -1.61
USP4-209ENST00000475873 ARSHQ5FYA8 562 aa5□□□□□ -1.61
USP4-209ENST00000475873 AGBL4Q5VU57 503 aa5□□□□□ -1.61
USP4-209ENST00000475873 TBC1D3GQ6DHY5 549 aa5□□□□□ -1.61
USP4-209ENST00000475873 TBC1D3CQ6IPX1 549 aa5□□□□□ -1.61
USP4-209ENST00000475873 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5□□□□□ -1.61
USP4-209ENST00000475873 ABI3BPQ7Z7G0 1075 aa5□□□□□ -1.61
USP4-209ENST00000475873 SCD5Q86SK9 330 aa5□□□□□ -1.61
USP4-209ENST00000475873 FAM35AQ86V20 835 aa5□□□□□ -1.61
USP4-209ENST00000475873 TRIM69Q86WT6 500 aa5□□□□□ -1.61
USP4-209ENST00000475873 SLITRK4Q8IW52 837 aa5□□□□□ -1.61
USP4-209ENST00000475873 TP53INP2Q8IXH6 220 aa5□□□□□ -1.61
USP4-209ENST00000475873 UNC5BQ8IZJ1 945 aa5□□□□□ -1.61
USP4-209ENST00000475873 TBC1D3Q8IZP1 549 aaPredicted RBP5□□□□□ -1.61
USP4-209ENST00000475873 RBFAQ8N0V3 343 aa5□□□□□ -1.61
USP4-209ENST00000475873 STK40Q8N2I9 435 aa5□□□□□ -1.61
USP4-209ENST00000475873 SDR16C5Q8N3Y7 309 aa5□□□□□ -1.61
USP4-209ENST00000475873 CSGALNACT2Q8N6G5 542 aa5□□□□□ -1.61
USP4-209ENST00000475873 TTC13Q8NBP0 860 aa5□□□□□ -1.61
USP4-209ENST00000475873 PTPRN2Q92932 1015 aa5□□□□□ -1.61
USP4-209ENST00000475873 GTF3C6Q969F1 213 aa5□□□□□ -1.61
USP4-209ENST00000475873 BMFQ96LC9 184 aa5□□□□□ -1.61
USP4-209ENST00000475873 RANBP9Q96S59 729 aa5□□□□□ -1.61
USP4-209ENST00000475873 SMOQ99835 787 aa5□□□□□ -1.61
USP4-209ENST00000475873 MMTAG2Q9BU76 263 aaKnown RBP5□□□□□ -1.61
USP4-209ENST00000475873 SLC2A11Q9BYW1 496 aa5□□□□□ -1.61
USP4-209ENST00000475873 MTMR12Q9C0I1 747 aa5□□□□□ -1.61
USP4-209ENST00000475873 ELOVL4Q9GZR5 314 aa5□□□□□ -1.61
USP4-209ENST00000475873 NACA2Q9H009 215 aa5□□□□□ -1.61
USP4-209ENST00000475873 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5□□□□□ -1.61
USP4-209ENST00000475873 DNAJC28Q9NX36 388 aa5□□□□□ -1.61
USP4-209ENST00000475873 SALL4Q9UJQ4 1053 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms