RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 SGSHP51688 502 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 ADPRHP54922 357 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 UCNP55089 124 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 CFHR1Q03591 330 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 TBC1D25Q3MII6 688 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 C9orf64Q5T6V5 341 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 BROXQ5VW32 411 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 NAPEPLDQ6IQ20 393 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 RFWD3Q6PCD5 774 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 IQCHQ86VS3 1027 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 ZNF843Q8N446 348 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 CARNMT1Q8N4J0 409 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 OR14C36Q8NHC7 312 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 WFDC5Q8TCV5 224 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 NDRG1Q92597 394 aaKnown RBP13.06□□□□□ -0.32
SKA3-206ENST00000475251 KDM4CQ9H3R0 1056 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 MTG2Q9H4K7 406 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 EBF2Q9HAK2 575 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 STIM2Q9P246 746 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 ERVW-1Q9UQF0 538 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 DMTF1Q9Y222 760 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 KNTC1P50748 2209 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 ASXL3Q9C0F0 2248 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 ITIH6Q6UXX5 1313 aa13.06□□□□□ -0.32
SKA3-206ENST00000475251 TBC1D3DA0A087WVF3 549 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 TBC1D3IA0A087WXS9 549 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 TBC1D3EA0A087X179 549 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 TBC1D3KA0A087X1G2 549 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 TBC1D3FA6NER0 549 aaPredicted RBP13.05□□□□□ -0.32
SKA3-206ENST00000475251 TBC1D3LB9A6J9 549 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 TULP2O00295 520 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 RHOBTB3O94955 611 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 TBC1D3HP0C7X1 549 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 EPB41P11171 864 aaKnown RBP13.05□□□□□ -0.32
SKA3-206ENST00000475251 VDRP11473 427 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 LCP1P13796 627 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 SLC6A4P31645 630 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 PSMD8P48556 350 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 CLDN6P56747 220 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 TBX4P57082 545 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 DAOAP59103 153 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 MCCD1P59942 119 aaPredicted RBP13.05□□□□□ -0.32
SKA3-206ENST00000475251 CXADRP78310 365 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 TLE3Q04726 772 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 KCNJ12Q14500 433 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 ELAVL3Q14576 367 aaKnown RBP13.05□□□□□ -0.32
SKA3-206ENST00000475251 EDRF1Q3B7T1 1238 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 TAF1BQ53T94 588 aaPredicted RBP13.05□□□□□ -0.32
SKA3-206ENST00000475251 FAM133BQ5BKY9 247 aaKnown RBP13.05□□□□□ -0.32
SKA3-206ENST00000475251 PITRM1Q5JRX3 1037 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 TBC1D3GQ6DHY5 549 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 TBC1D3CQ6IPX1 549 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 SPACA3Q8IXA5 215 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 TBC1D3Q8IZP1 549 aaPredicted RBP13.05□□□□□ -0.32
SKA3-206ENST00000475251 GUF1Q8N442 669 aaKnown RBP13.05□□□□□ -0.32
SKA3-206ENST00000475251 DCBLD1Q8N8Z6 715 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 ZNF248Q8NDW4 579 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 SEMA4DQ92854 862 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 WBP1Q96G27 269 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 MRGPRX3Q96LB0 322 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 SERPINB11Q96P15 392 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 LGMNQ99538 433 aa13.05□□□□□ -0.32
SKA3-206ENST00000475251 HELZ2Q9BYK8 2649 aaKnown RBP13.05□□□□□ -0.32
SKA3-206ENST00000475251 ASH1LQ9NR48 2969 aaKnown RBP13.04□□□□□ -0.32
SKA3-206ENST00000475251 BPTFQ12830 3046 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 SETXQ7Z333 2677 aaKnown RBP13.04□□□□□ -0.32
SKA3-206ENST00000475251 GOLGA6L7A0A1B0GV03 622 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 C10orf142B7Z368 130 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 J3QKU1 62 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 SLC7A4O43246 635 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 LATO43561 262 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 LUC7L3O95232 432 aaKnown RBP13.04□□□□□ -0.32
SKA3-206ENST00000475251 F13A1P00488 732 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 LTFP02788 710 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 ZSCAN22P10073 491 aaPredicted RBP13.04□□□□□ -0.32
SKA3-206ENST00000475251 TBXAS1P24557 533 aaPredicted RBP13.04□□□□□ -0.32
SKA3-206ENST00000475251 PCBP4P57723 403 aaKnown RBP13.04□□□□□ -0.32
SKA3-206ENST00000475251 TMPRSS3P57727 454 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 ECT2LQ008S8 904 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 RHDQ02161 417 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 CCDC173Q0VFZ6 552 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 BNIP3Q12983 259 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 NNTQ13423 1086 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 CUL2Q13617 745 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 STAT4Q14765 748 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 FOXD4L6Q3SYB3 417 aaPredicted RBP13.04□□□□□ -0.32
SKA3-206ENST00000475251 FOXD4L3Q6VB84 417 aaPredicted RBP13.04□□□□□ -0.32
SKA3-206ENST00000475251 DSG4Q86SJ6 1040 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 LSMEM2Q8N112 164 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 AADATQ8N5Z0 425 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 LMLNQ96KR4 655 aa13.04□□□□□ -0.32
SKA3-206ENST00000475251 ZNF578Q96N58 590 aaPredicted RBP13.04□□□□□ -0.32
SKA3-206ENST00000475251 TTC34A8MYJ7 566 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 O00370 1275 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 CETN3O15182 167 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 FBXO21O94952 628 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 IL1BP01584 269 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 PFKFB1P16118 471 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 CMA1P23946 247 aa13.03□□□□□ -0.32
SKA3-206ENST00000475251 MZF1P28698 734 aaPredicted RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms