RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 SCML1Q9UN30 329 aa5.34□□□□□ -1.55
SNRNP40-204ENST00000474025 CLCA2Q9UQC9 943 aa5.34□□□□□ -1.55
SNRNP40-204ENST00000474025 MTMR6Q9Y217 621 aa5.34□□□□□ -1.55
SNRNP40-204ENST00000474025 HBS1LQ9Y450 684 aaKnown RBP5.34□□□□□ -1.55
SNRNP40-204ENST00000474025 MYLKQ15746 1914 aa5.34□□□□□ -1.55
SNRNP40-204ENST00000474025 PVALEFA0A1B0GWK0 134 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 A0A1W2PP55 124 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 FAM187AA6NFU0 413 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 LRRC72A6NJI9 287 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 B8ZZF3 427 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 TLR4O00206 839 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 TULP2O00295 520 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 SPTLC2O15270 562 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 POLR2DO15514 142 aaKnown RBP5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 MSI1O43347 362 aaKnown RBP5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 LATO43561 262 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 KLRC4O43908 158 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 SIN3BO75182 1162 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 RNASEH2AO75792 299 aaKnown RBP5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 WISP1O95388 367 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 ZBED1O96006 694 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 NR3C1P04150 777 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 SLFN14P0C7P3 912 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 TRIM49P0CI25 452 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 TRIM49CP0CI26 452 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 CKMT2P17540 419 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 POLR2EP19388 210 aaKnown RBP5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 GLDCP23378 1020 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 ACP1P24666 158 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 ACTN2P35609 894 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 CSKP41240 450 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 GCLMP48507 274 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 ARRB1P49407 418 aaPredicted RBP5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 CSRP3P50461 194 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 CCR5P51681 352 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 TKTL1P51854 596 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 ADPRHP54922 357 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 PPP2CBP62714 309 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 PPP2CAP67775 309 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 PPP3CAQ08209 521 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 KCNH2Q12809 1159 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 BNIP3Q12983 259 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 STK4Q13043 487 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 ARID5BQ14865 1188 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 ZNF394Q53GI3 561 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 TAF1BQ53T94 588 aaPredicted RBP5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 FAM133BQ5BKY9 247 aaKnown RBP5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 MPP7Q5T2T1 576 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 ADGRF1Q5T601 910 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 C9orf64Q5T6V5 341 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 CEP135Q66GS9 1140 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 ARHGAP17Q68EM7 881 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 RFWD3Q6PCD5 774 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 SPATS2Q86XZ4 545 aaKnown RBP5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 MMAAQ8IVH4 418 aaKnown RBP5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 GRAMD1CQ8IYS0 662 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 OXR1Q8N573 874 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 AADATQ8N5Z0 425 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 SLC4A11Q8NBS3 891 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 ZNF248Q8NDW4 579 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 GANCQ8TET4 914 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 NDRG1Q92597 394 aaKnown RBP5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 TTC17Q96AE7 1141 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 TMA16Q96EY4 203 aaKnown RBP5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 SERAC1Q96JX3 654 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 MRGPRX3Q96LB0 322 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 LGMNQ99538 433 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 ULBP1Q9BZM6 244 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 UBXN6Q9BZV1 441 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 NEUROG2Q9H2A3 272 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 OLA1Q9NTK5 396 aaKnown RBP5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 SUN2Q9UH99 717 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 SFMBT1Q9UHJ3 866 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 INTS6Q9UL03 887 aaKnown RBP5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 FZD4Q9ULV1 537 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 NCKAP1Q9Y2A7 1128 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 PCDHB1Q9Y5F3 818 aa5.33□□□□□ -1.56
SNRNP40-204ENST00000474025 ITIH6Q6UXX5 1313 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 YJEFN3A6XGL0 299 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 E7ENQ6 273 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 PYCARD-AS1I3L0S3 204 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 TRIM38O00635 465 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 PDXKO00764 312 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 XPO1O14980 1071 aaKnown RBP5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 MAPK13O15264 365 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 IRAK2O43187 625 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 SIGLEC6O43699 453 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 CUTAO60888 179 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 TBL1XO60907 577 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 RNASEH1O60930 286 aaKnown RBP5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 DXOO77932 396 aaKnown RBP5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 YEATS4O95619 227 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 AVPP01185 164 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 IGLV3-27P01718 113 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 ASLP04424 464 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 GOT1P17174 413 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 SLC6A4P31645 630 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 SLC8A1P32418 973 aa5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 CTSOP43234 321 aaPredicted RBP5.32□□□□□ -1.56
SNRNP40-204ENST00000474025 AFMP43652 599 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms