RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 PDGFBP01127 241 aaPredicted RBP15.22■□□□□ 0.03
COL9A3-209ENST00000469852 KDELR1P24390 212 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 CTNNA2P26232 953 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 EPHB2P29323 1055 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 HLA-FP30511 346 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 CD70P32970 193 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 CTNNA1P35221 906 aaKnown RBP15.22■□□□□ 0.03
COL9A3-209ENST00000469852 PEX5P50542 639 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 CDH4P55283 916 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 TPI1P60174 286 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 DPYSQ14117 519 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 KRT81Q14533 505 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 ACBD5Q5T8D3 534 aaPredicted RBP15.22■□□□□ 0.03
COL9A3-209ENST00000469852 TTC39BQ5VTQ0 682 aaPredicted RBP15.22■□□□□ 0.03
COL9A3-209ENST00000469852 RFX8Q6ZV50 586 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 CHST9Q7L1S5 443 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 PEX26Q7Z412 305 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 EDAQ92838 391 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 RNF25Q96BH1 459 aaPredicted RBP15.22■□□□□ 0.03
COL9A3-209ENST00000469852 CSPG4P5Q96PW8 444 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 XPO6Q96QU8 1125 aaKnown RBP15.22■□□□□ 0.03
COL9A3-209ENST00000469852 ABCB8Q9NUT2 735 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 ETNK2Q9NVF9 386 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 AMFRQ9UKV5 643 aa15.22■□□□□ 0.03
COL9A3-209ENST00000469852 MTF2Q9Y483 593 aaPredicted RBP15.22■□□□□ 0.03
COL9A3-209ENST00000469852 TYW5A2RUC4 315 aaKnown RBP15.21■□□□□ 0.03
COL9A3-209ENST00000469852 LRRD1A4D1F6 860 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 H0Y626 953 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 CLDN11O75508 207 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 GLULP15104 373 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 RHOQP17081 205 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 AMPD1P23109 780 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 DGKGP49619 791 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 SIGLEC14Q08ET2 396 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 LMAN2Q12907 356 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 GEN1Q17RS7 908 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 TMEM215Q68D42 235 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 FSTL4Q6MZW2 842 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 MFSD7Q6UXD7 560 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 SYCE1Q8N0S2 351 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 ZNF687Q8N1G0 1237 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 NETO2Q8NC67 525 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 KCTD6Q8NC69 237 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 FIBINQ8TAL6 211 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 FAM3CQ92520 227 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 HES6Q96HZ4 224 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 P2RY13Q9BPV8 354 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 CALN1Q9BXU9 219 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 FOXQ1Q9C009 403 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 NOL6Q9H6R4 1146 aaKnown RBP15.21■□□□□ 0.03
COL9A3-209ENST00000469852 ARHGEF4Q9NR80 690 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 TMEM248Q9NWD8 314 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 DNAI1Q9UI46 699 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 INTS6Q9UL03 887 aaKnown RBP15.21■□□□□ 0.03
COL9A3-209ENST00000469852 PCDHA3Q9Y5H8 950 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 CHD5Q8TDI0 1954 aa15.21■□□□□ 0.03
COL9A3-209ENST00000469852 PRRT4C9JH25 899 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 H3BRJ5 948 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 DCLK1O15075 740 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 KAT7O95251 611 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 EGFP01133 1207 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 ERCC2P18074 760 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 TARSP26639 723 aaKnown RBP15.2■□□□□ 0.02
COL9A3-209ENST00000469852 MZF1P28698 734 aaPredicted RBP15.2■□□□□ 0.02
COL9A3-209ENST00000469852 EIF2DP41214 584 aaKnown RBP15.2■□□□□ 0.02
COL9A3-209ENST00000469852 CSKP41240 450 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 DNA2P51530 1060 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 STARD6P59095 220 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 PRKCQQ04759 706 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 CDH18Q13634 790 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 PDK2Q15119 407 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 LLGL1Q15334 1064 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 FUT11Q495W5 492 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 TMEM196Q5HYL7 178 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 ZFYVE27Q5T4F4 411 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 MEI1Q5TIA1 1274 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 DCAF12L1Q5VU92 463 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 GRAMD4Q6IC98 578 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 AADACL2Q6P093 401 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 TRIM67Q6ZTA4 783 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 KIAA0907Q7Z7F0 614 aaPredicted RBP15.2■□□□□ 0.02
COL9A3-209ENST00000469852 TP53INP2Q8IXH6 220 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 KATNAL2Q8IYT4 538 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 APCDD1Q8J025 514 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 SLC35F6Q8N357 371 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 NPWQ8N729 165 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 RTL3Q8N8U3 475 aaKnown RBP15.2■□□□□ 0.02
COL9A3-209ENST00000469852 TERB1Q8NA31 727 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 PCDH19Q8TAB3 1148 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 ALG14Q96F25 216 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 PNKPQ96T60 521 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 HERPUD2Q9BSE4 406 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 SLC2A11Q9BYW1 496 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 KLC2Q9H0B6 622 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 KCND1Q9NSA2 647 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 DDX56Q9NY93 547 aaKnown RBP15.2■□□□□ 0.02
COL9A3-209ENST00000469852 DEC1Q9P2X7 70 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 GGA2Q9UJY4 613 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 HCN2Q9UL51 889 aa15.2■□□□□ 0.02
COL9A3-209ENST00000469852 NDRG2Q9UN36 371 aaKnown RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms