RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 ADAT2Q7Z6V5 191 aaKnown RBP16.66■□□□□ 0.26
COL7A1-204ENST00000462475 CHSY1Q86X52 802 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 MMAAQ8IVH4 418 aaKnown RBP16.66■□□□□ 0.26
COL7A1-204ENST00000462475 ELOA2Q8IYF1 753 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-204ENST00000462475 MDM1Q8TC05 714 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 SLC4A5Q9BY07 1137 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 CCDC86Q9H6F5 360 aaKnown RBP16.66■□□□□ 0.26
COL7A1-204ENST00000462475 EBF2Q9HAK2 575 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 SCML1Q9UN30 329 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 ITIH6Q6UXX5 1313 aa16.66■□□□□ 0.26
COL7A1-204ENST00000462475 SMG1Q96Q15 3661 aaKnown RBP16.65■□□□□ 0.26
COL7A1-204ENST00000462475 PLXNB3Q9ULL4 1909 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 A0A1W2PPC4 97 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 CAPN9O14815 690 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 PCDHGA12O60330 932 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 RNASEH1O60930 286 aaKnown RBP16.65■□□□□ 0.26
COL7A1-204ENST00000462475 RNASEH2AO75792 299 aaKnown RBP16.65■□□□□ 0.26
COL7A1-204ENST00000462475 LETM1O95202 739 aaPredicted RBP16.65■□□□□ 0.26
COL7A1-204ENST00000462475 IGLV3-25P01717 112 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 APOEP02649 317 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 TACR2P21452 398 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 GRK6P43250 576 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 ACADSBP45954 432 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 PSMD8P48556 350 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 MARSP56192 900 aaKnown RBP16.65■□□□□ 0.26
COL7A1-204ENST00000462475 RACK1P63244 317 aaKnown RBP16.65■□□□□ 0.26
COL7A1-204ENST00000462475 NUCB2P80303 420 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 BEND5Q7L4P6 421 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 CIR1Q86X95 450 aaPredicted RBP16.65■□□□□ 0.26
COL7A1-204ENST00000462475 CCDC117Q8IWD4 279 aaPredicted RBP16.65■□□□□ 0.26
COL7A1-204ENST00000462475 APCDD1Q8J025 514 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 KDM1BQ8NB78 822 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 NEUROG2Q9H2A3 272 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 TJP2Q9UDY2 1190 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 SLCO3A1Q9UIG8 710 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 GPSM3Q9Y4H4 160 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.65■□□□□ 0.26
COL7A1-204ENST00000462475 LOC400499M0QZD8 3231 aa16.65■□□□□ 0.26
COL7A1-204ENST00000462475 CABIN1Q9Y6J0 2220 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 EDDM13A0A1B0GTR0 161 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 GNA14O95837 355 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 TRUB2O95900 331 aaKnown RBP16.64■□□□□ 0.25
COL7A1-204ENST00000462475 SRPRAP08240 638 aaKnown RBP16.64■□□□□ 0.25
COL7A1-204ENST00000462475 SLC8A1P32418 973 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 STK19P49842 368 aaPredicted RBP16.64■□□□□ 0.25
COL7A1-204ENST00000462475 C21orf59P57076 290 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 ECT2LQ008S8 904 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 PAK1Q13153 545 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 KCNJ12Q14500 433 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 MEA1Q16626 185 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 GJB7Q6PEY0 223 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 C19orf48Q6RUI8 117 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 STK40Q8N2I9 435 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 AADATQ8N5Z0 425 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 STK32AQ8WU08 396 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 RPL10LQ96L21 214 aaKnown RBP16.64■□□□□ 0.25
COL7A1-204ENST00000462475 FAM129BQ96TA1 746 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 OMDQ99983 421 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 TRIM62Q9BVG3 475 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 ACE2Q9BYF1 805 aaPredicted RBP16.64■□□□□ 0.25
COL7A1-204ENST00000462475 POPDC2Q9HBU9 364 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 UBE2TQ9NPD8 197 aaPredicted RBP16.64■□□□□ 0.25
COL7A1-204ENST00000462475 ADAMTS1Q9UHI8 967 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 CEP83Q9Y592 693 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 TMEM131Q92545 1883 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 APC2O95996 2303 aa16.64■□□□□ 0.25
COL7A1-204ENST00000462475 A0A1B0GTQ1 180 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 TARSL2A2RTX5 802 aaKnown RBP16.63■□□□□ 0.25
COL7A1-204ENST00000462475 C10orf142B7Z368 130 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 VILLO15195 856 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 THAP12O43422 761 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 MED7O43513 233 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 TNFSF14O43557 240 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 MOCS3O95396 460 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 WNT1P04628 370 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 VAV1P15498 845 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 GNA15P30679 374 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 PDCLQ13371 301 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 EIF4EBP2Q13542 120 aaPredicted RBP16.63■□□□□ 0.25
COL7A1-204ENST00000462475 COL9A2Q14055 689 aaPredicted RBP16.63■□□□□ 0.25
COL7A1-204ENST00000462475 TAF5Q15542 800 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 CCDC157Q569K6 752 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 PRAMEF14Q5SWL7 426 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 RNF219Q5W0B1 726 aaPredicted RBP16.63■□□□□ 0.25
COL7A1-204ENST00000462475 TMEM110Q86TL2 294 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 OR2T34Q8NGX1 318 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 ZNF606Q8WXB4 792 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 PTPRN2Q92932 1015 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 BTN2A3PQ96KV6 586 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 SRRTQ9BXP5 876 aaKnown RBP16.63■□□□□ 0.25
COL7A1-204ENST00000462475 FZD4Q9ULV1 537 aa16.63■□□□□ 0.25
COL7A1-204ENST00000462475 FAM149AA5PLN7 773 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 LRRC72A6NJI9 287 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 BECN2A8MW95 431 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 F5H5T6 163 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 WNT9AO14904 365 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 PDGFRAP16234 1089 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 MZF1P28698 734 aaPredicted RBP16.62■□□□□ 0.25
COL7A1-204ENST00000462475 ADPRHP54922 357 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 YWHAZP63104 245 aaKnown RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms