RNA–Protein interactions for RNA: ENST00000457942.1

CHCHD3-204, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 4

Gene CHCHD3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-204ENST00000457942 FIBINQ8TAL6 211 aa16.3■□□□□ 0.2
CHCHD3-204ENST00000457942 SLC39A13Q96H72 371 aa16.3■□□□□ 0.2
CHCHD3-204ENST00000457942 ZDHHC5Q9C0B5 715 aa16.3■□□□□ 0.2
CHCHD3-204ENST00000457942 THAP9Q9H5L6 903 aa16.3■□□□□ 0.2
CHCHD3-204ENST00000457942 GAREM1Q9H706 876 aa16.3■□□□□ 0.2
CHCHD3-204ENST00000457942 SYNCQ9H7C4 482 aa16.3■□□□□ 0.2
CHCHD3-204ENST00000457942 PRSS16Q9NQE7 514 aa16.3■□□□□ 0.2
CHCHD3-204ENST00000457942 SLC12A6Q9UHW9 1150 aa16.3■□□□□ 0.2
CHCHD3-204ENST00000457942 CYTH4Q9UIA0 394 aa16.3■□□□□ 0.2
CHCHD3-204ENST00000457942 METTL12A8MUP2 240 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 BECN2A8MW95 431 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 F5H5T6 163 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 BCAT2O15382 392 aaPredicted RBP16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 RNASEH1O60930 286 aaKnown RBP16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 LUC7L3O95232 432 aaKnown RBP16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 IGLV3-19P01714 112 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 PRKCSHP14314 528 aaPredicted RBP16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 RPS14P62263 151 aaKnown RBP16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 CDK17Q00537 523 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 PTK2Q05397 1052 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 BEND5Q7L4P6 421 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 TMEM110Q86TL2 294 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 PIP4K2CQ8TBX8 421 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 DNASE2BQ8WZ79 361 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 MYEOVQ96EZ4 313 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 PPP1R13BQ96KQ4 1090 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 BTN2A3PQ96KV6 586 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 BTBD1Q9H0C5 482 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 PDCL3Q9H2J4 239 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 XPO7Q9UIA9 1087 aaKnown RBP16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 NFE2L3Q9Y4A8 694 aa16.29■□□□□ 0.2
CHCHD3-204ENST00000457942 ACACAQ13085 2346 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 GTPBP10A4D1E9 387 aaKnown RBP16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 GRAP2O75791 330 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 SEMA4FO95754 770 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 CER1O95813 267 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 ABCB4P21439 1286 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 TACR2P21452 398 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 PON1P27169 355 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 ACSL1P33121 698 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 KRT9P35527 623 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 ZBTB16Q05516 673 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 TAF5Q15542 800 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 MAN2A1Q16706 1144 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 HSP90AA4PQ58FG1 418 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 PITRM1Q5JRX3 1037 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 OR6B2Q6IFH4 312 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 MMS22LQ6ZRQ5 1243 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 DHX40Q8IX18 779 aaKnown RBP16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 C1orf131Q8NDD1 294 aaKnown RBP16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 SHC3Q92529 594 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 PCED1AQ9H1Q7 454 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 CLSTN2Q9H4D0 955 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 MTG2Q9H4K7 406 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 C6orf106Q9H6K1 298 aaPredicted RBP16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 SCUBE2Q9NQ36 999 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 TM7SF3Q9NS93 570 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 DDIT4Q9NX09 232 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 TOR4AQ9NXH8 423 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 KIAA1522Q9P206 1035 aaPredicted RBP16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 DACH1Q9UI36 760 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 DNAJC12Q9UKB3 198 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 NCKAP1Q9Y2A7 1128 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 BTBD3Q9Y2F9 522 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 NYNRINQ9P2P1 1898 aaKnown RBP16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 TENM4Q6N022 2769 aa16.28■□□□□ 0.2
CHCHD3-204ENST00000457942 FAM47DPA6NHR8 397 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 HSF2BPO75031 334 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 SIN3BO75182 1162 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 FSBPO95073 299 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 SLC2A3P11169 496 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 MATKP42679 507 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 NUMBP49757 651 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 SNX16P57768 344 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 PITX1P78337 314 aaPredicted RBP16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 BNC1Q01954 994 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 SFSWAPQ12872 951 aaKnown RBP16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 FSCBQ5H9T9 825 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 EFHC1Q5JVL4 640 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 RABGAP1LQ5R372 815 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 DEFB106AQ8N104 65 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 TTC17Q96AE7 1141 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 CPXM1Q96SM3 734 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 ERVW-1Q9UQF0 538 aa16.27■□□□□ 0.2
CHCHD3-204ENST00000457942 TRABD2BA6NFA1 517 aa16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 KCNU1A8MYU2 1149 aa16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 PNMA6AP0CW24 399 aaPredicted RBP16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 CCR1P32246 355 aa16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 NNMTP40261 264 aa16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 CTSOP43234 321 aaPredicted RBP16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 NME3Q13232 169 aa16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 RAPGEF1Q13905 1077 aa16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 TEAD4Q15561 434 aa16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 HNRNPA1L2Q32P51 320 aaKnown RBP16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 DPCR1Q3MIW9 517 aa16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 IL27RAQ6UWB1 636 aa16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 LAYNQ6UX15 382 aa16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 C11orf57Q6ZUT1 292 aaPredicted RBP16.26■□□□□ 0.19
CHCHD3-204ENST00000457942 FAM183BPQ6ZVS7 135 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms