RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 HMGB4Q8WW32 186 aa19.23■□□□□ 0.67
SHH-204ENST00000441114 LMLNQ96KR4 655 aa19.23■□□□□ 0.67
SHH-204ENST00000441114 C1orf74Q96LT6 269 aa19.23■□□□□ 0.67
SHH-204ENST00000441114 MRPL47Q9HD33 250 aaKnown RBP19.23■□□□□ 0.67
SHH-204ENST00000441114 MPP6Q9NZW5 540 aa19.23■□□□□ 0.67
SHH-204ENST00000441114 INTS6Q9UL03 887 aaKnown RBP19.23■□□□□ 0.67
SHH-204ENST00000441114 PLA2G4CQ9UP65 541 aa19.23■□□□□ 0.67
SHH-204ENST00000441114 INVSQ9Y283 1065 aa19.23■□□□□ 0.67
SHH-204ENST00000441114 DOCK4Q8N1I0 1966 aa19.23■□□□□ 0.67
SHH-204ENST00000441114 HRO43593 1189 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 ATP5BP06576 529 aaKnown RBP19.22■□□□□ 0.67
SHH-204ENST00000441114 MZF1P28698 734 aaPredicted RBP19.22■□□□□ 0.67
SHH-204ENST00000441114 HOXA6P31267 233 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 GALCP54803 685 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 CDH4P55283 916 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 ARID5BQ14865 1188 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 KIAA1211LQ6NV74 962 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 SERPINA13PQ6UXR4 307 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 TFAP2DQ7Z6R9 452 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 SLFN11Q7Z7L1 901 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 ZNF683Q8IZ20 524 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 ZNF366Q8N895 744 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 MDGA1Q8NFP4 955 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 NKD2Q969F2 451 aaPredicted RBP19.22■□□□□ 0.67
SHH-204ENST00000441114 MRFAP1L1Q96HT8 127 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 GABRG3Q99928 467 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 OR12D3Q9UGF7 316 aa19.22■□□□□ 0.67
SHH-204ENST00000441114 DRGXA6NNA5 263 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 LILRB5O75023 590 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 CLDN11O75508 207 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 EPHX1P07099 455 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 HLA-EP13747 358 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 PRKCHP24723 683 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 ZNF252P-AS1Q0IIN9 211 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 MAPK8IP2Q13387 824 aaPredicted RBP19.21■□□□□ 0.67
SHH-204ENST00000441114 E2F5Q15329 346 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 SLC18A3Q16572 532 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 C5orf22Q49AR2 442 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 ACBD5Q5T8D3 534 aaPredicted RBP19.21■□□□□ 0.67
SHH-204ENST00000441114 RNF219Q5W0B1 726 aaPredicted RBP19.21■□□□□ 0.67
SHH-204ENST00000441114 CXorf57Q6NSI4 855 aaKnown RBP19.21■□□□□ 0.67
SHH-204ENST00000441114 RWDD4Q6NW29 188 aaKnown RBP19.21■□□□□ 0.67
SHH-204ENST00000441114 PRR23BQ6ZRT6 265 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 CEP68Q76N32 757 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 PYROXD2Q8N2H3 581 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 OR52K2Q8NGK3 314 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 ARHGEF26Q96DR7 871 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 CCDC42Q96M95 316 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 NHEJ1Q9H9Q4 299 aaPredicted RBP19.21■□□□□ 0.67
SHH-204ENST00000441114 PCSK1NQ9UHG2 260 aa19.21■□□□□ 0.67
SHH-204ENST00000441114 MUC22E2RYF6 1773 aaPredicted RBP19.2■□□□□ 0.66
SHH-204ENST00000441114 A0A1W2PQF6 199 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 SSU72P8A0A1W2PR75 194 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 FAM72CH0Y354 149 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 NPC1O15118 1278 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 ZBTB24O43167 697 aaPredicted RBP19.2■□□□□ 0.66
SHH-204ENST00000441114 SYNCRIPO60506 623 aaKnown RBP19.2■□□□□ 0.66
SHH-204ENST00000441114 RNF8O76064 485 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 RHOCP08134 193 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 DLDP09622 509 aaKnown RBP19.2■□□□□ 0.66
SHH-204ENST00000441114 CTSOP43234 321 aaPredicted RBP19.2■□□□□ 0.66
SHH-204ENST00000441114 SIM2Q14190 667 aaPredicted RBP19.2■□□□□ 0.66
SHH-204ENST00000441114 STARD3Q14849 445 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 LPAL2Q16609 132 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 PTPRNQ16849 979 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 PLEKHG6Q3KR16 790 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 EFHC2Q5JST6 749 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 FAM72AQ5TYM5 149 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 FAM72DQ6L9T8 149 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 FAM72BQ86X60 149 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 TC2NQ8N9U0 490 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 NTAN1Q96AB6 310 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 TTC17Q96AE7 1141 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 NUP85Q9BW27 656 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 PACSIN1Q9BY11 444 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 ZYG11BQ9C0D3 744 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 MUC3BQ9H195 1237 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 OSBPL2Q9H1P3 480 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 SLC6A17Q9H1V8 727 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 SPTLC3Q9NUV7 552 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 GPATCH2LQ9NWQ4 482 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 EBF1Q9UH73 591 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 FZD10Q9ULW2 581 aa19.2■□□□□ 0.66
SHH-204ENST00000441114 IGLV3-10A0A075B6K4 115 aa19.19■□□□□ 0.66
SHH-204ENST00000441114 CCDC163A0A0D9SF12 145 aa19.19■□□□□ 0.66
SHH-204ENST00000441114 PROB1E7EW31 1015 aa19.19■□□□□ 0.66
SHH-204ENST00000441114 RPP40O75818 363 aaKnown RBP19.19■□□□□ 0.66
SHH-204ENST00000441114 GABRG2P18507 467 aa19.19■□□□□ 0.66
SHH-204ENST00000441114 OXCT1P55809 520 aa19.19■□□□□ 0.66
SHH-204ENST00000441114 ST8SIA6P61647 398 aa19.19■□□□□ 0.66
SHH-204ENST00000441114 SLC12A1Q13621 1099 aa19.19■□□□□ 0.66
SHH-204ENST00000441114 ASTE1Q2TB18 679 aaPredicted RBP19.19■□□□□ 0.66
SHH-204ENST00000441114 DAB2IPQ5VWQ8 1189 aa19.19■□□□□ 0.66
SHH-204ENST00000441114 ALYREFQ86V81 257 aaKnown RBP19.19■□□□□ 0.66
SHH-204ENST00000441114 RASSF3Q86WH2 238 aa19.19■□□□□ 0.66
SHH-204ENST00000441114 BTBD6Q96KE9 485 aa19.19■□□□□ 0.66
SHH-204ENST00000441114 RPL10LQ96L21 214 aaKnown RBP19.19■□□□□ 0.66
SHH-204ENST00000441114 NENFQ9UMX5 172 aa19.19■□□□□ 0.66
SHH-204ENST00000441114 ERVW-1Q9UQF0 538 aa19.19■□□□□ 0.66
SHH-204ENST00000441114 DCLK1O15075 740 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms