RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 IGHV1OR15-9A0A0B4J2B8 117 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 BCLAF3A2AJT9 711 aaKnown RBP15.66■□□□□ 0.1
LIMS3-201ENST00000437679 ANKRD62A6NC57 917 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 C2CD4BA6NLJ0 364 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 AP5Z1O43299 807 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 CLDN11O75508 207 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 ENDOD1O94919 500 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 SRPRAP08240 638 aaKnown RBP15.66■□□□□ 0.1
LIMS3-201ENST00000437679 ZNF806P0C7X5 589 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 ACADMP11310 421 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 RPL6Q02878 288 aaKnown RBP15.66■□□□□ 0.1
LIMS3-201ENST00000437679 CAMK2GQ13555 558 aaPredicted RBP15.66■□□□□ 0.1
LIMS3-201ENST00000437679 CCDC6Q16204 474 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 CDO1Q16878 200 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 PLEKHG6Q3KR16 790 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 CCDC14Q49A88 953 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 C5orf22Q49AR2 442 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 FIGNQ5HY92 759 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 SPDYCQ5MJ68 293 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 RNF219Q5W0B1 726 aaPredicted RBP15.66■□□□□ 0.1
LIMS3-201ENST00000437679 ACAD10Q6JQN1 1059 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 DNAJC24Q6P3W2 148 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 MON1BQ7L1V2 547 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 CYP2U1Q7Z449 544 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 BNIPLQ7Z465 357 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 C14orf80Q86SX3 495 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 METTL3Q86U44 580 aaKnown RBP15.66■□□□□ 0.1
LIMS3-201ENST00000437679 FAM131BQ86XD5 332 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 TMEFF1Q8IYR6 380 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 ZNF366Q8N895 744 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 C12orf50Q8NA57 414 aaPredicted RBP15.66■□□□□ 0.1
LIMS3-201ENST00000437679 C3orf20Q8ND61 904 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 OR2T3Q8NH03 318 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 JOSD2Q8TAC2 188 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 C1orf74Q96LT6 269 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 HAPLN3Q96S86 360 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 TTYH3Q9C0H2 523 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 MKRN2Q9H000 416 aaKnown RBP15.66■□□□□ 0.1
LIMS3-201ENST00000437679 FBRSQ9HAH7 460 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 ANLNQ9NQW6 1124 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 VPS45Q9NRW7 570 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 ERVW-1Q9UQF0 538 aa15.66■□□□□ 0.1
LIMS3-201ENST00000437679 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.66■□□□□ 0.1
LIMS3-201ENST00000437679 MUC22E2RYF6 1773 aaPredicted RBP15.65■□□□□ 0.1
LIMS3-201ENST00000437679 SIGLEC16A6NMB1 481 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 NDUFS2O75306 463 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 GJB6O95452 261 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 GPD1P21695 349 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 SDHBP21912 280 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 PTPN9P43378 593 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 ID4P47928 161 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 COPAP53621 1224 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 CDH4P55283 916 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 ECT2LQ008S8 904 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 SULT2A1Q06520 285 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 C15orf59Q2T9L4 293 aaPredicted RBP15.65■□□□□ 0.1
LIMS3-201ENST00000437679 ARL13BQ3SXY8 428 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 PLA2G2CQ5R387 149 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 CXorf57Q6NSI4 855 aaKnown RBP15.65■□□□□ 0.1
LIMS3-201ENST00000437679 STRADAQ7RTN6 431 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 APCDD1Q8J025 514 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 KDM1BQ8NB78 822 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 HAUS4Q9H6D7 363 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 SNX10Q9Y5X0 201 aa15.65■□□□□ 0.1
LIMS3-201ENST00000437679 CEP192Q8TEP8 1941 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 I6L893 689 aaPredicted RBP15.64■□□□□ 0.09
LIMS3-201ENST00000437679 TPM3P06753 285 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 MZF1P28698 734 aaPredicted RBP15.64■□□□□ 0.09
LIMS3-201ENST00000437679 OXTRP30559 389 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 RFC1P35251 1148 aaPredicted RBP15.64■□□□□ 0.09
LIMS3-201ENST00000437679 NNMTP40261 264 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 PRKCIP41743 596 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 DPP6P42658 865 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 IRAK1P51617 712 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 PLK1P53350 603 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 KLHL30Q0D2K2 578 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 RSPO4Q2I0M5 234 aaPredicted RBP15.64■□□□□ 0.09
LIMS3-201ENST00000437679 AASDHQ4L235 1098 aaPredicted RBP15.64■□□□□ 0.09
LIMS3-201ENST00000437679 LYSMD4Q5XG99 296 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 WDR59Q6PJI9 974 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 ARMCX6Q7L4S7 300 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 CACUL1Q86Y37 369 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 MCOLN2Q8IZK6 566 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 FAM172AQ8WUF8 416 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 PIGKQ92643 395 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 IQCDQ96DY2 449 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 MYO19Q96H55 970 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 VCPIP1Q96JH7 1222 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 MRGPRX3Q96LB0 322 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 SYT11Q9BT88 431 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 TSPY26PQ9H489 355 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 PRSS16Q9NQE7 514 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 ITM2CQ9NQX7 267 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 TMPRSS4Q9NRS4 437 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 IFNKQ9P0W0 207 aa15.64■□□□□ 0.09
LIMS3-201ENST00000437679 USP36Q9P275 1121 aaKnown RBP15.64■□□□□ 0.09
LIMS3-201ENST00000437679 CDV3Q9UKY7 258 aaKnown RBP15.64■□□□□ 0.09
LIMS3-201ENST00000437679 A0A1W2PQJ5 194 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 DRGXA6NNA5 263 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms