RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 SCLYQ96I15 445 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 TMEM120AQ9BXJ8 343 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 DUSP16Q9BY84 665 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 KANSL3Q9P2N6 904 aa8.59□□□□□ -1.03
CD44-208ENST00000428726 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.59□□□□□ -1.03
CD44-208ENST00000428726 SMIM35A0A1B0GVV1 85 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 AURKAO14965 403 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 DDHD2O94830 711 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 SPATA31D3P0C874 917 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 ATP2A2P16615 1042 aaKnown RBP8.59□□□□□ -1.04
CD44-208ENST00000428726 CCNHP51946 323 aaPredicted RBP8.59□□□□□ -1.04
CD44-208ENST00000428726 SLC18A1P54219 525 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 MRPS6P82932 125 aaKnown RBP8.59□□□□□ -1.04
CD44-208ENST00000428726 SEMG2Q02383 582 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 COL9A2Q14055 689 aaPredicted RBP8.59□□□□□ -1.04
CD44-208ENST00000428726 MTFR1Q15390 333 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 EFHC2Q5JST6 749 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 MORN1Q5T089 497 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 ARHGAP17Q68EM7 881 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 ALKAL1Q6UXT8 129 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 SPATA31D4Q6ZUB0 917 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 RAPH1Q70E73 1250 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 C14orf80Q86SX3 495 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 TAC4Q86UU9 113 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 NUDCD3Q8IVD9 361 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 SLC45A3Q96JT2 553 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 TNIP3Q96KP6 325 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 APBA2Q99767 749 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 PLEKHA5Q9HAU0 1116 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 NMUR1Q9HB89 426 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 CNTN3Q9P232 1028 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 MORF4L1Q9UBU8 362 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 FETUBQ9UGM5 382 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 SLC2A6Q9UGQ3 507 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 ZFP69BQ9UJL9 534 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 SLC45A1Q9Y2W3 748 aa8.59□□□□□ -1.04
CD44-208ENST00000428726 DNAJC8O75937 253 aaPredicted RBP8.58□□□□□ -1.04
CD44-208ENST00000428726 OAS1P00973 400 aaKnown RBP8.58□□□□□ -1.04
CD44-208ENST00000428726 GM2AP17900 193 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 STIP1P31948 543 aaKnown RBP8.58□□□□□ -1.04
CD44-208ENST00000428726 SERPINB4P48594 390 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 USP46P62068 366 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 EFEMP1Q12805 493 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 TAF11Q15544 211 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 SV2CQ496J9 727 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 SLC45A4Q5BKX6 768 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 RGMBQ6NW40 437 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 DENND6AQ8IWF6 608 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 RYBPQ8N488 228 aaPredicted RBP8.58□□□□□ -1.04
CD44-208ENST00000428726 DENND1AQ8TEH3 1009 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 UTP4Q969X6 686 aaKnown RBP8.58□□□□□ -1.04
CD44-208ENST00000428726 SIGLEC10Q96LC7 697 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 PPP1R10Q96QC0 940 aaKnown RBP8.58□□□□□ -1.04
CD44-208ENST00000428726 NDNQ99608 321 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 SEPT5Q99719 369 aaPredicted RBP8.58□□□□□ -1.04
CD44-208ENST00000428726 NMUR2Q9GZQ4 415 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 IARS2Q9NSE4 1012 aaKnown RBP8.58□□□□□ -1.04
CD44-208ENST00000428726 PNPOQ9NVS9 261 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 PAK5Q9P286 719 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 TXNDC16Q9P2K2 825 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 SLC39A10Q9ULF5 831 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 DERAQ9Y315 318 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 SDK1Q7Z5N4 2213 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 PLXNB2O15031 1838 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 TET1Q8NFU7 2136 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 OR51F1A6NGY5 319 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 UNCXA6NJT0 531 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 PRPF4O43172 522 aaKnown RBP eCLIP8.58□□□□□ -1.04
CD44-208ENST00000428726 CD4P01730 458 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 DESP17661 470 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 NMBRP28336 390 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 TYK2P29597 1187 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 SLC8A1P32418 973 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 RGS2P41220 211 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 CRYBB1P53674 252 aaPredicted RBP8.58□□□□□ -1.04
CD44-208ENST00000428726 AQP5P55064 265 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 SNX16P57768 344 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 SETDB1Q15047 1291 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 N4BP2L1Q5TBK1 243 aaPredicted RBP8.58□□□□□ -1.04
CD44-208ENST00000428726 RASSF3Q86WH2 238 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 BANPQ8N9N5 519 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 SH3TC2Q8TF17 1288 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 GRAMD1AQ96CP6 724 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 CYP4F12Q9HCS2 524 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 ZFATQ9P243 1243 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 FZD10Q9ULW2 581 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 SMG5Q9UPR3 1016 aaKnown RBP8.58□□□□□ -1.04
CD44-208ENST00000428726 C15orf41Q9Y2V0 281 aa8.58□□□□□ -1.04
CD44-208ENST00000428726 NEMP2A6NFY4 417 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 A8MX80 341 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 E7ESA3 106 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 MAP3K13O43283 966 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 BNIP3LO60238 219 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 EDF1O60869 148 aaKnown RBP8.57□□□□□ -1.04
CD44-208ENST00000428726 LTFP02788 710 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 SETSIPP0DME0 302 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 AKR1A1P14550 325 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 TSHRP16473 764 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 NCF2P19878 526 aaPredicted RBP8.57□□□□□ -1.04
CD44-208ENST00000428726 DNAJB2P25686 324 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms