RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 RWDD3Q9Y3V2 267 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 VGLL3A8MV65 326 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 PRODHO43272 600 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 CAPN15O75808 1086 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 FTH1P02794 183 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF286BP0CG31 522 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 HOXB8P17481 243 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 PTPN1P18031 435 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 KELP23276 732 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TPP2P29144 1249 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 PSEN1P49768 467 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TKTL1P51854 596 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 PLIN5Q00G26 463 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 MPP3Q13368 585 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TIMM50Q3ZCQ8 353 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 PCNX4Q63HM2 1172 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 FOXR1Q6PIV2 292 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TMEM86AQ8N2M4 240 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 SUN3Q8TAQ9 357 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ENKURQ8TC29 256 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 KAT2BQ92831 832 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 POP5Q969H6 163 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 PI4K2AQ9BTU6 479 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 RASSF1Q9NS23 344 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 DNMT3LQ9UJW3 386 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 BARX2Q9UMQ3 279 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 MRPS33Q9Y291 106 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 BTBD3Q9Y2F9 522 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ACOT9Q9Y305 439 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 MFHAS1Q9Y4C4 1052 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 PNPLA6Q8IY17 1366 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TEX46H3BTG2 121 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 SLC28A1O00337 649 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 INPP4BO15327 924 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ATP9AO75110 1047 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 TSC22D2O75157 780 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ASGR1P07306 291 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 PPM1AP35813 382 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 RPP38P78345 283 aaKnown RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF57Q68EA5 555 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-204ENST00000423058 STX12Q86Y82 276 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 HASPINQ8TF76 798 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 ISCA1Q9BUE6 129 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 CATSPERZQ9NTU4 200 aa6.99□□□□□ -1.29
SCN1A-204ENST00000423058 RBM22Q9NW64 420 aaKnown RBP eCLIP6.99□□□□□ -1.291e-6■■■■■ 27.8
SCN1A-204ENST00000423058 ZC3H13Q5T200 1668 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ESYT3A0FGR9 886 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 TMEM120BA0PK00 339 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 TRIM49D1C9J1S8 452 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 DNALI1O14645 258 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 FASP25445 335 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 KLRC1P26715 233 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CASP1P29466 404 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CTNNB1P35222 781 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 VHLP40337 213 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 GSPT2Q8IYD1 628 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ATP13A3Q9H7F0 1226 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 AASDHPPTQ9NRN7 309 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 SNCAIPQ9Y6H5 919 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 RIMS1Q86UR5 1692 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ADGRB3O60242 1522 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CSH1P0DML2 217 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CSH2P0DML3 217 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ACADSP16219 412 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 BCAP31P51572 246 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 GRIK4Q16099 956 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 FAM187BQ17R55 369 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 PRR23CQ6ZRP0 262 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 FBXO16Q8IX29 292 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ADGRG2Q8IZP9 1017 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ABHD16BQ9H3Z7 469 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 MGAT4AQ9UM21 535 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ADGRG1Q9Y653 693 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 PP2D1A8MPX8 630 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 UBE2Q2LH0YL09 131 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 H3BRB1 525 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CACNB4O00305 520 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 SEC22BO75396 215 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 COILP38432 576 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 RPL19P84098 196 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 TRIM25Q14258 630 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 MILR1Q7Z6M3 343 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 GPSM1Q86YR5 675 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 AADATQ8N5Z0 425 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 FLCNQ8NFG4 579 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 DNAJC9Q8WXX5 260 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF558Q96NG5 402 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 IDI2Q9BXS1 227 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 KLHL4Q9C0H6 718 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 TUT1Q9H6E5 874 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ATP13A1Q9HD20 1204 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 OPTCQ9UBM4 332 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 IQSEC2Q5JU85 1478 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ERI2A8K979 691 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CXCL11O14625 94 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ATP5C1P36542 298 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 IL5RAQ01344 420 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 SULT2A1Q06520 285 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CBWD6Q4V339 395 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms