RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 TAC4Q86UU9 113 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 SPATS2Q86XZ4 545 aaKnown RBP8.39□□□□□ -1.07
VIM-202ENST00000421459 UNC45BQ8IWX7 931 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 LGI2Q8N0V4 545 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 SCML4Q8N228 414 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 PPM1KQ8N3J5 372 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 HJURPQ8NCD3 748 aaPredicted RBP8.39□□□□□ -1.07
VIM-202ENST00000421459 OR2T34Q8NGX1 318 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 OR14C36Q8NHC7 312 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 LMO3Q8TAP4 145 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 GOLGA1Q92805 767 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 PTPRN2Q92932 1015 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 SLC39A13Q96H72 371 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 SERAC1Q96JX3 654 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 ACP6Q9NPH0 428 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 SCUBE2Q9NQ36 999 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 ST7Q9NRC1 585 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 DKK4Q9UBT3 224 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 TJP2Q9UDY2 1190 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 CYTH4Q9UIA0 394 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 SARDHQ9UL12 918 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 PTPRBP23467 1997 aa8.39□□□□□ -1.07
VIM-202ENST00000421459 NUMA1Q14980 2115 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 CKAP5Q14008 2032 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 A0A087WV48 116 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 TBC1D3DA0A087WVF3 549 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 TBC1D3IA0A087WXS9 549 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 TBC1D3EA0A087X179 549 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 TBC1D3KA0A087X1G2 549 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 A0A1W2PQ27 194 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 A0A1W2PQ64 194 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 TBC1D3FA6NER0 549 aaPredicted RBP8.38□□□□□ -1.07
VIM-202ENST00000421459 LRRC72A6NJI9 287 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 C10orf142B7Z368 130 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 TBC1D3LB9A6J9 549 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 SLC16A3O15427 465 aaKnown RBP8.38□□□□□ -1.07
VIM-202ENST00000421459 IRAK2O43187 625 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 RNASEH1O60930 286 aaKnown RBP8.38□□□□□ -1.07
VIM-202ENST00000421459 SDC3O75056 442 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 RTN2O75298 545 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 LUC7L3O95232 432 aaKnown RBP8.38□□□□□ -1.07
VIM-202ENST00000421459 IL1BP01584 269 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 PAEPP09466 180 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 TBC1D3HP0C7X1 549 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 PDGFRAP16234 1089 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 DRD3P35462 400 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 ACADVLP49748 655 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 IRAK1P51617 712 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 ADPRHP54922 357 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 ZNF445P59923 1031 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 YWHAEP62258 255 aaKnown RBP8.38□□□□□ -1.07
VIM-202ENST00000421459 FKBP3Q00688 224 aaKnown RBP8.38□□□□□ -1.07
VIM-202ENST00000421459 ECT2LQ008S8 904 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 CDH18Q13634 790 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 ZNF658Q5TYW1 1059 aaPredicted RBP8.38□□□□□ -1.07
VIM-202ENST00000421459 NUGGCQ68CJ6 796 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 TBC1D3GQ6DHY5 549 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 TBC1D3CQ6IPX1 549 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 USP30Q70CQ3 517 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 TBC1D3Q8IZP1 549 aaPredicted RBP8.38□□□□□ -1.07
VIM-202ENST00000421459 FMR1NBQ8N0W7 255 aaPredicted RBP8.38□□□□□ -1.07
VIM-202ENST00000421459 OR52K2Q8NGK3 314 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 IRGQQ8WZA9 623 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 KLK6Q92876 244 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 FAM149B1Q96BN6 582 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 KREMEN1Q96MU8 473 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 TSG101Q99816 390 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 FBRSQ9HAH7 460 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 ARHGAP20Q9P2F6 1191 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 ARMCX3Q9UH62 379 aaPredicted RBP8.38□□□□□ -1.07
VIM-202ENST00000421459 ADAMTS1Q9UHI8 967 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 KIAA1257Q9ULG3 409 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 CEP83Q9Y592 693 aa8.38□□□□□ -1.07
VIM-202ENST00000421459 GCN1Q92616 2671 aaKnown RBP8.38□□□□□ -1.07
VIM-202ENST00000421459 TMEM131Q92545 1883 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 SYNJ2BP-COX16A0A087WUM0 186 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 EDDM13A0A1B0GTR0 161 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 FAM170AA1A519 330 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 TARSL2A2RTX5 802 aaKnown RBP8.37□□□□□ -1.07
VIM-202ENST00000421459 EIF4E1BA6NMX2 242 aaKnown RBP8.37□□□□□ -1.07
VIM-202ENST00000421459 TLR4O00206 839 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 RNF103O00237 685 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 PAPSS1O43252 624 aaPredicted RBP8.37□□□□□ -1.07
VIM-202ENST00000421459 KALRNO60229 2985 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 RFPL3O75679 317 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 C1QL1O75973 258 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 ASLP04424 464 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 MYF5P13349 255 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 GOT1P17174 413 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 TACR2P21452 398 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 EPHA8P29322 1005 aaPredicted RBP8.37□□□□□ -1.07
VIM-202ENST00000421459 GGCXP38435 758 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 GPD2P43304 727 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 NXPH1P58417 271 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 HES3Q5TGS1 186 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 FBXL19Q6PCT2 694 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 SND1Q7KZF4 910 aaKnown RBP eCLIP8.37□□□□□ -1.072e-10■■□□□ 14.2
VIM-202ENST00000421459 TMPRSS12Q86WS5 348 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 CHSY1Q86X52 802 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 FRS2Q8WU20 508 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms