RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 MNAT1P51948 309 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 NEK3P51956 506 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 SARNPP82979 210 aaKnown RBP15.24■□□□□ 0.03
USP4-203ENST00000415188 ADCY1Q08828 1119 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 DNAJC3Q13217 504 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 GLRA4Q5JXX5 417 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 TTC39BQ5VTQ0 682 aaPredicted RBP15.24■□□□□ 0.03
USP4-203ENST00000415188 FAM47EQ6ZV65 393 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 ADGRF2Q8IZF7 708 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 SMG8Q8ND04 991 aaKnown RBP15.24■□□□□ 0.03
USP4-203ENST00000415188 KCTD13Q8WZ19 329 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 ZNF75CPQ92670 426 aaPredicted RBP15.24■□□□□ 0.03
USP4-203ENST00000415188 MTBPQ96DY7 904 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 IGSF21Q96ID5 467 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 FERMT1Q9BQL6 677 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 VN1R3Q9BXE9 311 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 S1PR5Q9H228 398 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 CXCL16Q9H2A7 254 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 DPEP3Q9H4B8 488 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 DHX35Q9H5Z1 703 aaKnown RBP15.24■□□□□ 0.03
USP4-203ENST00000415188 MKS1Q9NXB0 559 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 TTLL3Q9Y4R7 772 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 HES2Q9Y543 173 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 LOC730098B7Z3J9 87 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 KRT37O76014 449 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 CXCL14O95715 111 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 TROVE2P10155 538 aaKnown RBP eCLIP15.23■□□□□ 0.03
USP4-203ENST00000415188 CCDC130P13994 396 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 SLC8A1P32418 973 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 ARL4AP40617 200 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 SEMA5AQ13591 1074 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 SLC25A52Q3SY17 297 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 KBTBD12Q3ZCT8 623 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 PPP6R3Q5H9R7 873 aaPredicted RBP15.23■□□□□ 0.03
USP4-203ENST00000415188 CYS1Q717R9 158 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 IGDCC3Q8IVU1 814 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 TRIM42Q8IWZ5 723 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 FITM2Q8N6M3 262 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 URGCPQ8TCY9 931 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 RSPH1Q8WYR4 309 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 MRRFQ96E11 262 aaKnown RBP15.23■□□□□ 0.03
USP4-203ENST00000415188 RMDN2Q96LZ7 410 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 CSPG4P5Q96PW8 444 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 KCTD15Q96SI1 283 aaPredicted RBP15.23■□□□□ 0.03
USP4-203ENST00000415188 APOL6Q9BWW8 343 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 PHF7Q9BWX1 381 aaPredicted RBP15.23■□□□□ 0.03
USP4-203ENST00000415188 DUSP16Q9BY84 665 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 B3GNT5Q9BYG0 378 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 ZBP1Q9H171 429 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 RNF39Q9H2S5 420 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 ETNK1Q9HBU6 452 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 ZC3H7BQ9UGR2 993 aaKnown RBP15.23■□□□□ 0.03
USP4-203ENST00000415188 HCN4Q9Y3Q4 1203 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 HCFC2Q9Y5Z7 792 aa15.23■□□□□ 0.03
USP4-203ENST00000415188 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.22■□□□□ 0.03
USP4-203ENST00000415188 H3BRJ5 948 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 STK10O94804 968 aaKnown RBP15.22■□□□□ 0.03
USP4-203ENST00000415188 FBXO21O94952 628 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 POMCP01189 267 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 SNRPAP09012 282 aaKnown RBP15.22■□□□□ 0.03
USP4-203ENST00000415188 DHRS4L1P0CG22 281 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 SRGAP2BP0DMP2 458 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 MLNP12872 115 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 LCP1P13796 627 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 SERPINB9P50453 376 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 AIF1P55008 147 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 HEATR6Q6AI08 1181 aaKnown RBP15.22■□□□□ 0.03
USP4-203ENST00000415188 DDX53Q86TM3 631 aaKnown RBP15.22■□□□□ 0.03
USP4-203ENST00000415188 CAND1Q86VP6 1230 aaKnown RBP15.22■□□□□ 0.03
USP4-203ENST00000415188 LRRC6Q86X45 466 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 TAB3Q8N5C8 712 aaPredicted RBP15.22■□□□□ 0.03
USP4-203ENST00000415188 B3GALNT2Q8NCR0 500 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 SLC2A14Q8TDB8 520 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 TCP10LQ8TDR4 215 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 C10orf82Q8WW14 230 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 OLFM3Q96PB7 478 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 RAB3IPQ96QF0 476 aaPredicted RBP15.22■□□□□ 0.03
USP4-203ENST00000415188 EIF2B3Q9NR50 452 aaKnown RBP15.22■□□□□ 0.03
USP4-203ENST00000415188 SLC38A7Q9NVC3 462 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 GRID1Q9ULK0 1009 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 STAP1Q9ULZ2 295 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 IPPQ9Y573 584 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 USP3Q9Y6I4 520 aa15.22■□□□□ 0.03
USP4-203ENST00000415188 C2CD2LO14523 706 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 SPTLC1O15269 473 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 HNRNPCL1O60812 293 aaKnown RBP15.21■□□□□ 0.03
USP4-203ENST00000415188 APOEP02649 317 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 C1QAP02745 245 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 PDGFRBP09619 1106 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 CTSAP10619 480 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 AKAP5P24588 427 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 ADRA1DP25100 572 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 NOS2P35228 1153 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 CCNFP41002 786 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 MGAT5Q09328 741 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 CBX2Q14781 532 aaPredicted RBP15.21■□□□□ 0.03
USP4-203ENST00000415188 SH2D5Q6ZV89 423 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 ASRGL1Q7L266 308 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 BNIPLQ7Z465 357 aa15.21■□□□□ 0.03
USP4-203ENST00000415188 CCNJLQ8IV13 435 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms