RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SUCOQ9UBS9 1254 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 NAGPAQ9UK23 515 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 CST8O60676 142 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 USP17L8P0C7I0 530 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 MTM1Q13496 603 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 ACAP2Q15057 778 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 FAM187BQ17R55 369 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 RPRD1AQ96P16 312 aaPredicted RBP13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 MTG1Q9BT17 334 aaPredicted RBP13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 CCDC88CQ9P219 2028 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 ITIH6Q6UXX5 1313 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 F5H5T6 163 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 PDXKO00764 312 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 NEK3P51956 506 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 SLC4A11Q8NBS3 891 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 BHLHE22Q8NFJ8 381 aaPredicted RBP13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 PHF10Q8WUB8 498 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 VANGL2Q9ULK5 521 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 DMTF1Q9Y222 760 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 PCDHB7Q9Y5E2 793 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 TSPAN1O60635 241 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 COILP38432 576 aaPredicted RBP13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 EMC1Q8N766 993 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 BPIFB6Q8NFQ5 453 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 OSBP2Q969R2 916 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 MED11Q9P086 117 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 RAB23Q9ULC3 237 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 MEMO1Q9Y316 297 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 RBP3P10745 1247 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 TXNRD1Q16881 649 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 PCDHGA10Q9Y5H3 936 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 AFF2P51816 1311 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 CCNT2O60583 730 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 LRG1P02750 347 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 MAZP56270 477 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 SPIDRQ14159 915 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 ZNF621Q6ZSS3 439 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 ATG9AQ7Z3C6 839 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 C10orf107Q8IVU9 208 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 RNF149Q8NC42 400 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 FAR1Q8WVX9 515 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 KCND2Q9NZV8 630 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 C2CD2Q9Y426 696 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 WDR19Q8NEZ3 1342 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 SNAP23O00161 211 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 CYP21A2P08686 494 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 H2AFXP16104 143 aaPredicted RBP13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 GALCP54803 685 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 STRIP1Q5VSL9 837 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 GALNT18Q6P9A2 607 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 WDR59Q6PJI9 974 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 SP140LQ9H930 580 aa13.57□□□□□ -0.24
CCDC88A-204ENST00000413716 ERI2A8K979 691 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 PRKCBP05771 671 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 ODC1P11926 461 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 ETS1P14921 441 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 MECP2P51608 486 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 CDKL4Q5MAI5 379 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 REXO1L1PQ8IX06 675 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 ZNF540Q8NDQ6 660 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 CDK5RAP1Q96SZ6 601 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 GPER1Q99527 375 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 FAM118BQ9BPY3 351 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 CELF4Q9BZC1 486 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 GPAMQ9HCL2 828 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 USP17L5A8MUK1 530 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 PTX3P26022 381 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 RGS8P57771 180 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 CDADC1Q9BWV3 514 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 MYH1P12882 1939 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 MYH2Q9UKX2 1941 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 MYH4Q9Y623 1939 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 AKAP8O43823 692 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 DYNLL1P63167 89 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 AADACL4Q5VUY2 407 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 IRGCQ6NXR0 463 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 RAB43Q86YS6 212 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 ZNF248Q8NDW4 579 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 ZNF548Q8NEK5 533 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 OXNAD1Q96HP4 312 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 IFT46Q9NQC8 304 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 AASDHPPTQ9NRN7 309 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 SEC22BO75396 215 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 CCNKO75909 580 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 PLEKHA8P1O95397 391 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 DBTP11182 482 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 MAPK9P45984 424 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 FAM98CQ17RN3 349 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 HECTD3Q5T447 861 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 DEF8Q6ZN54 512 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 OR5T3Q8NGG3 340 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 TBATAQ96M53 351 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 GREM2Q9H772 168 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 AGAP1Q9UPQ3 857 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 CBX3Q13185 183 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 TCEAL6Q6IPX3 200 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 BRSK2Q8IWQ3 736 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 OFCC1Q8IZS5 231 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms