RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 TSSK1BQ9BXA7 367 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 LRRC40Q9H9A6 602 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 NT5MQ9NPB1 228 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 TXLNGQ9NUQ3 528 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 DRG1Q9Y295 367 aaKnown RBP8.73□□□□□ -1.01
SYNE1-211ENST00000413186 E5RI56 91 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 MDM4O15151 490 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 CCL16O15467 120 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 NBNO60934 754 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 CLDN11O75508 207 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 ADH1CP00326 375 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 GSTA1P08263 222 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 GSTA2P09210 222 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 MAGOHP61326 146 aaKnown RBP8.73□□□□□ -1.01
SYNE1-211ENST00000413186 TRIP4Q15650 581 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-211ENST00000413186 TTC39BQ5VTQ0 682 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-211ENST00000413186 LHX8Q68G74 356 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 KDELC2Q7Z4H8 507 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 OSTM1Q86WC4 334 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 RASSF3Q86WH2 238 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 MAB21L3Q8N8X9 362 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 ST13P5Q8NFI4 369 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-211ENST00000413186 PLD4Q96BZ4 506 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 KCNK16Q96T55 309 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 TRIM56Q9BRZ2 755 aaKnown RBP8.73□□□□□ -1.01
SYNE1-211ENST00000413186 CERS4Q9HA82 394 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 SMYD2Q9NRG4 433 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 IRAK4Q9NWZ3 460 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 CLIC5Q9NZA1 410 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 THEGQ9P2T0 379 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 SHOC2Q9UQ13 582 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 C2CD4BA6NLJ0 364 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 TMEM189-UBE2V1I3L0A0 370 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 COPEO14579 308 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 MAP3K6O95382 1288 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 DDX6P26196 483 aaKnown RBP eCLIP8.73□□□□□ -1.01
SYNE1-211ENST00000413186 HSPA9P38646 679 aaKnown RBP8.73□□□□□ -1.01
SYNE1-211ENST00000413186 MAGEA4P43358 317 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 SOX4Q06945 474 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-211ENST00000413186 ILF2Q12905 390 aaKnown RBP8.73□□□□□ -1.01
SYNE1-211ENST00000413186 GTF2H3Q13889 308 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 SLC45A4Q5BKX6 768 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 C1orf220Q5T0J3 134 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 SRRM1Q8IYB3 904 aaKnown RBP8.73□□□□□ -1.01
SYNE1-211ENST00000413186 Q9H521 79 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 STMN3Q9NZ72 180 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 DNAJB4Q9UDY4 337 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 HMGXB4Q9UGU5 601 aa8.73□□□□□ -1.01
SYNE1-211ENST00000413186 SDR42E2A6NKP2 422 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 EIF3HO15372 352 aaKnown RBP eCLIP8.72□□□□□ -1.01
SYNE1-211ENST00000413186 ARHGEF9O43307 516 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 ERCC2P18074 760 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 IFT88Q13099 833 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 COLGALT2Q8IYK4 626 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 SLC25A41Q8N5S1 370 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 TDRD5Q8NAT2 981 aaKnown RBP8.72□□□□□ -1.01
SYNE1-211ENST00000413186 POF1BQ8WVV4 589 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 CEP295NLQ96MC4 621 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 PNKPQ96T60 521 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 ANKZF1Q9H8Y5 726 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 SMG5Q9UPR3 1016 aaKnown RBP8.72□□□□□ -1.01
SYNE1-211ENST00000413186 PAGE1O75459 146 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 DCTN3O75935 186 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 TTC4O95801 387 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 HAPLN1P10915 354 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-211ENST00000413186 CDK16Q00536 496 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 XRCC4Q13426 336 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 CUL3Q13618 768 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 TSNAXIP1Q2TAA8 658 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 MPPE1Q53F39 396 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 DNAJB7Q7Z6W7 309 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-211ENST00000413186 TSPAN17Q96FV3 270 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 SRPK1Q96SB4 655 aaKnown RBP8.72□□□□□ -1.01
SYNE1-211ENST00000413186 HAPLN2Q9GZV7 340 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 DZANK1Q9NVP4 752 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 CACNG4Q9UBN1 327 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 MAGEB16A2A368 324 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 ZNF263O14978 683 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 LRCH4O75427 683 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 NDUFS3O75489 264 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 NFATC1O95644 943 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 WEE1P30291 646 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 L1CAMP32004 1257 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 MDH1P40925 334 aaKnown RBP8.72□□□□□ -1.01
SYNE1-211ENST00000413186 GATMP50440 423 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 HDAC4P56524 1084 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 YBEYP58557 167 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-211ENST00000413186 PTK6Q13882 451 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 ASTE1Q2TB18 679 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-211ENST00000413186 GSPT2Q8IYD1 628 aaKnown RBP8.72□□□□□ -1.01
SYNE1-211ENST00000413186 DIS3LQ8TF46 1054 aaKnown RBP8.72□□□□□ -1.01
SYNE1-211ENST00000413186 SLC35F5Q8WV83 523 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 TRIM4Q9C037 500 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 POLR1EQ9GZS1 481 aaKnown RBP8.72□□□□□ -1.01
SYNE1-211ENST00000413186 RABEP2Q9H5N1 569 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 PCDH18Q9HCL0 1135 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 MIOSQ9NXC5 875 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 CFAP97Q9P2B7 532 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 MOSPD1Q9UJG1 213 aa8.72□□□□□ -1.01
SYNE1-211ENST00000413186 AJAP1Q9UKB5 411 aaPredicted RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms