RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 BTBD8Q5XKL5 378 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 GPRIN1Q7Z2K8 1008 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 PID1Q7Z2X4 250 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 ZNF567Q8N184 647 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 C8orf48Q96LL4 319 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 FAM193BQ96PV7 902 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-205ENST00000410093 PAAF1Q9BRP4 392 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 TKTL2Q9H0I9 626 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 ZCWPW1Q9H0M4 648 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 GBA3Q9H227 469 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 PRO3102Q9H379 93 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 MANSC1Q9H8J5 431 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 LRRC40Q9H9A6 602 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 KIF9Q9HAQ2 790 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 MLXIPLQ9NP71 852 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 TRMT13Q9NUP7 481 aaKnown RBP13.93□□□□□ -0.18
LIMS1-205ENST00000410093 TMEM161AQ9NX61 479 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 COX16Q9P0S2 106 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 KLHL8Q9P2G9 620 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-205ENST00000410093 TRIM49D1C9J1S8 452 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 BIRC5O15392 142 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 IRAK2O43187 625 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 HOXA2O43364 376 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 HNRNPCL1O60812 293 aaKnown RBP13.92□□□□□ -0.18
LIMS1-205ENST00000410093 PQBP1O60828 265 aaKnown RBP13.92□□□□□ -0.18
LIMS1-205ENST00000410093 ATP5BP06576 529 aaKnown RBP13.92□□□□□ -0.18
LIMS1-205ENST00000410093 CCNCP24863 283 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 PTPN3P26045 913 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 CRHR1P34998 444 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 BRCC3P46736 316 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 PSEN1P49768 467 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 TLE2Q04725 743 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 CDK18Q07002 472 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 TEX44Q53QW1 395 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 MON1AQ86VX9 555 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 KLHDC8BQ8IXV7 354 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 TDHQ8IZJ6 230 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 AGGF1Q8N302 714 aaeCLIP13.92□□□□□ -0.182e-8■■□□□ 12.2
LIMS1-205ENST00000410093 DQX1Q8TE96 717 aaKnown RBP13.92□□□□□ -0.18
LIMS1-205ENST00000410093 DEPDC1BQ8WUY9 529 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 ATP2A3Q93084 1043 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 FATE1Q969F0 183 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 RNF34Q969K3 372 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 MRRFQ96E11 262 aaKnown RBP13.92□□□□□ -0.18
LIMS1-205ENST00000410093 C1orf74Q96LT6 269 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 CEP295NLQ96MC4 621 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 SERPINB11Q96P15 392 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 TUBB6Q9BUF5 446 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 NSMCE4AQ9NXX6 385 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 BFARQ9NZS9 450 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 SCML2Q9UQR0 700 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 INPP5FQ9Y2H2 1132 aa13.92□□□□□ -0.18
LIMS1-205ENST00000410093 AAR2Q9Y312 384 aaKnown RBP13.92□□□□□ -0.18
LIMS1-205ENST00000410093 OR6C75A6NL08 312 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 FOXO6A8MYZ6 492 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 ANKRD65E5RJM6 399 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 TNFRSF10BO14763 440 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 MAP3K6O95382 1288 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 CLTBP09497 229 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 SRGAP2BP0DMP2 458 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 EPHB2P29323 1055 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 GRIK1P39086 918 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 ETV4P43268 484 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 CACNA2D1P54289 1103 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 PPARDQ03181 441 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 ELAVL2Q12926 359 aaKnown RBP13.91□□□□□ -0.18
LIMS1-205ENST00000410093 BFSP2Q13515 415 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 ATG16L1Q676U5 607 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 TIGD7Q6NT04 549 aaPredicted RBP13.91□□□□□ -0.18
LIMS1-205ENST00000410093 MSANTD2Q6P1R3 559 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 KYAT3Q6YP21 454 aaKnown RBP13.91□□□□□ -0.18
LIMS1-205ENST00000410093 TAC4Q86UU9 113 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 CCDC117Q8IWD4 279 aaPredicted RBP13.91□□□□□ -0.18
LIMS1-205ENST00000410093 COLGALT2Q8IYK4 626 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 PDCD7Q8N8D1 485 aaKnown RBP13.91□□□□□ -0.18
LIMS1-205ENST00000410093 CCDC63Q8NA47 563 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 OR10T2Q8NGX3 314 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 TXLNGQ9NUQ3 528 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 TMEM39AQ9NV64 488 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 TMEM30AQ9NV96 361 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 ADAM28Q9UKQ2 775 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 PLLPQ9Y342 182 aa13.91□□□□□ -0.18
LIMS1-205ENST00000410093 MYO18AQ92614 2054 aaKnown RBP13.91□□□□□ -0.18
LIMS1-205ENST00000410093 C2CD2LO14523 706 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 CACNG3O60359 315 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 LRIG2O94898 1065 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 PYGBP11216 843 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 IGFBP6P24592 240 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-205ENST00000410093 PSMB4P28070 264 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 HADHAP40939 763 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 RASSF2P50749 326 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 SLC5A3P53794 718 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 MGAT5Q09328 741 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 NIPAL4Q0D2K0 466 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 BNIP1Q12981 228 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 ZKSCAN8Q15776 578 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-205ENST00000410093 INSCQ1MX18 579 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 NAPEPLDQ6IQ20 393 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 CASC4Q6P4E1 433 aa13.9□□□□□ -0.18
LIMS1-205ENST00000410093 TRAF7Q6Q0C0 670 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms