RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 ABHD8Q96I13 439 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 SCYL1Q96KG9 808 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 WDR83Q9BRX9 315 aaKnown RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 FAM49BQ9NUQ9 324 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 BRCA1P38398 1863 aaKnown RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 HBP1O60381 514 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 GRIN3BO60391 1043 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 TNFAIP8O95379 198 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 ARF4P18085 180 aaPredicted RBP13.27□□□□□ -0.28
PTPRN-202ENST00000409251 POLR2BP30876 1174 aaKnown RBP13.27□□□□□ -0.28
PTPRN-202ENST00000409251 SH3BGRP55822 239 aaPredicted RBP13.27□□□□□ -0.28
PTPRN-202ENST00000409251 DPYSL3Q14195 570 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 DUOXA2Q1HG44 320 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 JADE1Q6IE81 842 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 C10orf107Q8IVU9 208 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 PARP8Q8N3A8 854 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 TSPAN14Q8NG11 270 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 MAML3Q96JK9 1138 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 CIB1Q99828 191 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 NIFKQ9BYG3 293 aaKnown RBP13.27□□□□□ -0.28
PTPRN-202ENST00000409251 NUF2Q9BZD4 464 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 CISHQ9NSE2 258 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 SSX2IPQ9Y2D8 614 aa13.27□□□□□ -0.28
PTPRN-202ENST00000409251 ALOX15P16050 662 aaPredicted RBP13.27□□□□□ -0.29
PTPRN-202ENST00000409251 XRCC1P18887 633 aaPredicted RBP13.27□□□□□ -0.29
PTPRN-202ENST00000409251 CCR10P46092 362 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 RABGGTBP53611 331 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 NOMO3P69849 1222 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 NEDD8Q15843 81 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 C1QTNF12Q5T7M4 302 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 SH3PXD2AQ5TCZ1 1133 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 C12orf29Q8N999 325 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 LENG8Q96PV6 779 aaPredicted RBP13.27□□□□□ -0.29
PTPRN-202ENST00000409251 MRPL46Q9H2W6 279 aaKnown RBP13.27□□□□□ -0.29
PTPRN-202ENST00000409251 SNTG2Q9NY99 539 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 ZNF510Q9Y2H8 683 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 PLLPQ9Y342 182 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 DNAJC25-GNG10A0A024R161 153 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 TNPO2O14787 897 aaKnown RBP13.27□□□□□ -0.29
PTPRN-202ENST00000409251 OGTO15294 1046 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 STRNO43815 780 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 MAGEA8P43361 318 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 NME5P56597 212 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 DMPKQ09013 629 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 GRIK4Q16099 956 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 HSF5Q4G112 596 aaPredicted RBP13.27□□□□□ -0.29
PTPRN-202ENST00000409251 TDRPQ86YL5 185 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 MPP5Q8N3R9 675 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 GAB3Q8WWW8 586 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 AZIN2Q96A70 460 aa13.27□□□□□ -0.29
PTPRN-202ENST00000409251 PPEF2O14830 753 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 SPTLC1O15269 473 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 TNNC2P02585 160 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 EIF4BP23588 611 aaKnown RBP13.26□□□□□ -0.29
PTPRN-202ENST00000409251 MTTPP55157 894 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 MXD4Q14582 209 aaPredicted RBP13.26□□□□□ -0.29
PTPRN-202ENST00000409251 RAB6CQ53S08 254 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 SLC9A4Q6AI14 798 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 ARMCX6Q7L4S7 300 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 ABRAQ8N0Z2 381 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 CMTM5Q96DZ9 223 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 KIF12Q96FN5 646 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 FAM167AQ96KS9 214 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 SENP6Q9GZR1 1112 aaPredicted RBP13.26□□□□□ -0.29
PTPRN-202ENST00000409251 RAB6CQ9H0N0 254 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 ST6GALNAC4Q9H4F1 302 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 SERPINA6P08185 405 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 FAM163BP0C2L3 166 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 OCM2P0CE71 109 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 OCMP0CE72 109 aaPredicted RBP13.26□□□□□ -0.29
PTPRN-202ENST00000409251 IL1R2P27930 398 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 CDKL1Q00532 357 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 PAN2Q504Q3 1202 aaKnown RBP13.26□□□□□ -0.29
PTPRN-202ENST00000409251 CMPK2Q5EBM0 449 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 PERM1Q5SV97 790 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 MON1BQ7L1V2 547 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 RCN3Q96D15 328 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 HEXIM2Q96MH2 286 aaKnown RBP13.26□□□□□ -0.29
PTPRN-202ENST00000409251 C1orf232A0A0U1RR37 186 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 DNAJA2O60884 412 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 MTA2O94776 668 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 PTPN1P18031 435 aaKnown RBP13.26□□□□□ -0.29
PTPRN-202ENST00000409251 THOP1P52888 689 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 ESRRGP62508 458 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 RALGDSQ12967 914 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 CCDC142Q17RM4 750 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 GPR107Q5VW38 600 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 SPNS2Q8IVW8 549 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 TMC2Q8TDI7 906 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 SLC44A1Q8WWI5 657 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 CYGBQ8WWM9 190 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 TFAP2BQ92481 460 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 PRICKLE1Q96MT3 831 aaPredicted RBP13.26□□□□□ -0.29
PTPRN-202ENST00000409251 EIF2AQ9BY44 585 aaKnown RBP13.26□□□□□ -0.29
PTPRN-202ENST00000409251 PCDHAC1Q9H158 963 aa13.26□□□□□ -0.29
PTPRN-202ENST00000409251 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.26□□□□□ -0.29
PTPRN-202ENST00000409251 IGKV6D-21A0A0A0MT36 114 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 TREHO43280 583 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 AKAP10O43572 662 aa13.25□□□□□ -0.29
PTPRN-202ENST00000409251 USP12O75317 370 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms