RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 HTR3CQ8WXA8 447 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 HSFY1Q96LI6 401 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 SLC38A2Q96QD8 506 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 PNKPQ96T60 521 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 CELF4Q9BZC1 486 aaKnown RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 KCTD10Q9H3F6 313 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ANGPT4Q9Y264 503 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 RBAK-RBAKDNI3L0D1 243 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 NR5A2O00482 541 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 TRIM66O15016 1216 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 MFN2O95140 757 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ATP5F1P24539 256 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 YWHAQP27348 245 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 EPHB3P54753 998 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 HERVK_113P62684 666 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 PCID2Q5JVF3 399 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ANXA8L1Q5VT79 327 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 CDC42EP5Q6NZY7 148 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 PRR23CQ6ZRP0 262 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 CCDC149Q6ZUS6 474 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 PAGE2Q7Z2X7 111 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 EPHX4Q8IUS5 362 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 BRSK2Q8IWQ3 736 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 TCAIMQ8N3R3 496 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 SLC25A41Q8N5S1 370 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 SLC44A5Q8NCS7 719 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 OR2W6PQ8NHA6 318 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ITFG1Q8TB96 612 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 EPS8L3Q8TE67 593 aaKnown RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 HOPXQ9BPY8 73 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 TRIT1Q9H3H1 467 aaKnown RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 CLN6Q9NWW5 311 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ING3Q9NXR8 418 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 COMMD9Q9P000 198 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 MORF4L1Q9UBU8 362 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 HMGXB4Q9UGU5 601 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 SRP68Q9UHB9 627 aaKnown RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 URADA6NGE7 173 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 SLC9A3R1O14745 358 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-203ENST00000409050 MPZL2O60487 215 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 UNC5CO95185 931 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 IGSF6O95976 241 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 ITGB3P05106 788 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 S100A3P33764 101 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 RTP1P59025 263 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 GMFBP60983 142 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 RPS7P62081 194 aaKnown RBP6.21□□□□□ -1.41
SCN1A-203ENST00000409050 SMARCB1Q12824 385 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 MGAT5BQ3V5L5 792 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 METTL21CQ5VZV1 264 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 METTL7BQ6UX53 244 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 BRINP3Q76B58 766 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 FAM83AQ86UY5 434 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 KCNMB4Q86W47 210 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 FAM228AQ86W67 206 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 COLGALT1Q8NBJ5 622 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 ADCY4Q8NFM4 1077 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 PSMA8Q8TAA3 256 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 BORCS5Q969J3 196 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 FBXO32Q969P5 355 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 GPR101Q96P66 508 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-203ENST00000409050 CHCHD6Q9BRQ6 235 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 DDX43Q9NXZ2 648 aaKnown RBP6.21□□□□□ -1.41
SCN1A-203ENST00000409050 RCOR3Q9P2K3 495 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-203ENST00000409050 IQSEC2Q5JU85 1478 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-203ENST00000409050 C21orf2O43822 256 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 CATP04040 527 aaKnown RBP6.21□□□□□ -1.41
SCN1A-203ENST00000409050 SERPIND1P05546 499 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 UMPSP11172 480 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 CYP2F1P24903 491 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 PSMB9P28065 219 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 NTSP30990 170 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 GPD2P43304 727 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 GPR15P49685 360 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 RHOAP61586 193 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 MTMR2Q13614 643 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 MDH1BQ5I0G3 518 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 FAM43BQ6ZT52 329 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-203ENST00000409050 MARK2Q7KZI7 788 aaKnown RBP6.21□□□□□ -1.41
SCN1A-203ENST00000409050 PIWIL2Q8TC59 973 aaKnown RBP6.21□□□□□ -1.41
SCN1A-203ENST00000409050 USP33Q8TEY7 942 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 EEF1AKMT1Q8WVE0 214 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 ACOT12Q8WYK0 555 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 TATDN2Q93075 761 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 TMEM159Q96B96 161 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 SMARCD1Q96GM5 515 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 TEKT5Q96M29 485 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 FAM126AQ9BYI3 521 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-203ENST00000409050 HDHD2Q9H0R4 259 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 LRRC4BQ9NT99 713 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 TRPS1Q9UHF7 1281 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 ZNF232Q9UNY5 417 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 DMTF1Q9Y222 760 aa6.21□□□□□ -1.41
SCN1A-203ENST00000409050 ERN1O75460 977 aaKnown RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 RFX5P48382 616 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ACLYP53396 1101 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ALDH6A1Q02252 535 aaKnown RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 TRAF2Q12933 501 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 NFIL3Q16649 462 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms