RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 TMEM130Q8N3G9 435 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 RIBC1Q8N443 379 aaPredicted RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 CCDC185Q8N715 623 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 IRGQQ8WZA9 623 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 BTN2A3PQ96KV6 586 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 BBS2Q9BXC9 721 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 OXCT2Q9BYC2 517 aaPredicted RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 ETNK2Q9NVF9 386 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 MIOSQ9NXC5 875 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 CFAP97Q9P2B7 532 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 BAIAP2L1Q9UHR4 511 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 ZBTB42B2RXF5 422 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 TCP11X1B4DZS4 312 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 ZNF197O14709 1029 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 SYNCRIPO60506 623 aaKnown RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 CRTAMO95727 393 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 EDN1P05305 212 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 CCNB1P14635 433 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 LIG3P49916 1009 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 MPP3Q13368 585 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 BMPR2Q13873 1038 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 SYTL3Q4VX76 610 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 RFWD3Q6PCD5 774 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 PTAR1Q7Z6K3 402 aaPredicted RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 MCRS1Q96EZ8 462 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 CHMP6Q96FZ7 201 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 C11orf84Q9BUA3 381 aaPredicted RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 DRG1Q9Y295 367 aaKnown RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 ADAMTS4O75173 837 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 LRIG2O94898 1065 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 CORO1AP31146 461 aaKnown RBP9.3□□□□□ -0.92
LIG4-202ENST00000405925 CASP2P42575 452 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 CCDC15Q0P6D6 951 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 PARP6Q2NL67 630 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 HABP4Q5JVS0 413 aaKnown RBP9.3□□□□□ -0.92
LIG4-202ENST00000405925 STRA8Q7Z7C7 330 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 ALLCQ8N6M5 410 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 HJURPQ8NCD3 748 aaPredicted RBP9.3□□□□□ -0.92
LIG4-202ENST00000405925 MDM1Q8TC05 714 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 SGSM3Q96HU1 749 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 PRMT1Q99873 361 aaKnown RBP9.3□□□□□ -0.92
LIG4-202ENST00000405925 PRDM16Q9HAZ2 1276 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 RGS18Q9NS28 235 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 MARCOQ9UEW3 520 aaPredicted RBP9.3□□□□□ -0.92
LIG4-202ENST00000405925 SNX10Q9Y5X0 201 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 CAPN7Q9Y6W3 813 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 WDR27A2RRH5 827 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 GOLGA8TH3BQL2 631 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 PITPNM1O00562 1244 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 PTGESO14684 152 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 RNASEH1O60930 286 aaKnown RBP9.3□□□□□ -0.92
LIG4-202ENST00000405925 SYF2O95926 243 aaKnown RBP9.3□□□□□ -0.92
LIG4-202ENST00000405925 IGSF6O95976 241 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 ATP5BP06576 529 aaKnown RBP9.3□□□□□ -0.92
LIG4-202ENST00000405925 GALTP07902 379 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 PROZP22891 400 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 MDH1P40925 334 aaKnown RBP9.3□□□□□ -0.92
LIG4-202ENST00000405925 CDKN2BP42772 138 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 CRADDP78560 199 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 HSP90AA5PQ58FG0 334 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 SYPL2Q5VXT5 272 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 ARL14EPQ8N8R7 260 aaPredicted RBP9.3□□□□□ -0.92
LIG4-202ENST00000405925 CFAP61Q8NHU2 1237 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 CAVIN3Q969G5 261 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 SH3KBP1Q96B97 665 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 KLHL5Q96PQ7 755 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 SEMA3CQ99985 751 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 SLC4A5Q9BY07 1137 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 IRAK4Q9NWZ3 460 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 RREB1Q92766 1687 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 SDK1Q7Z5N4 2213 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 RIPK2O43353 540 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 VAPBO95292 243 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 TBX18O95935 607 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 ITGAVP06756 1048 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 RGS4P49798 205 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 MGAT5Q09328 741 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 C15orf39Q6ZRI6 1047 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 TMEM110Q86TL2 294 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 OR52K1Q8NGK4 314 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 KLHL29Q96CT2 875 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 P2RY11Q96G91 374 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 PWWP2AQ96N64 755 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 KCTD15Q96SI1 283 aaPredicted RBP9.3□□□□□ -0.92
LIG4-202ENST00000405925 GDF3Q9NR23 364 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 NINJ2Q9NZG7 142 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 APOBEC2Q9Y235 224 aaKnown RBP9.3□□□□□ -0.92
LIG4-202ENST00000405925 RWDD3Q9Y3V2 267 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 SSC5DA1L4H1 1573 aa9.3□□□□□ -0.92
LIG4-202ENST00000405925 GON4LQ3T8J9 2241 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 SLC38A8A6NNN8 435 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 A8MX80 341 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 HAS3O00219 553 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 EIF3HO15372 352 aaKnown RBP eCLIP9.29□□□□□ -0.926e-6■■■□□ 15.8
LIG4-202ENST00000405925 MFSD11O43934 449 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 MTA2O94776 668 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 HIST1H2AGP0C0S8 130 aaPredicted RBP9.29□□□□□ -0.92
LIG4-202ENST00000405925 POLR2EP19388 210 aaKnown RBP9.29□□□□□ -0.92
LIG4-202ENST00000405925 HIST1H2ADP20671 130 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 ITGALP20701 1170 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms