RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 ZDHHC24Q6UX98 284 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ARHGAP36Q6ZRI8 547 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 SHKBP1Q8TBC3 707 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 CCHCR1Q8TD31 782 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 HNRNPLLQ8WVV9 542 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 SEC14L1Q92503 715 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 SMG7Q92540 1137 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 PLD4Q96BZ4 506 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 LRRC45Q96CN5 670 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 P2RY11Q96G91 374 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 PWWP2AQ96N64 755 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 OLFM3Q96PB7 478 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 QKIQ96PU8 341 aaKnown RBP eCLIP3.81□□□□□ -1.82e-7■■■■■ 69
RTN4-208ENST00000404909 KLF16Q9BXK1 252 aaPredicted RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 SLC46A2Q9BY10 475 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 USP29Q9HBJ7 922 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 CFAP97Q9P2B7 532 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 MTRF1LQ9UGC7 380 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 DPP7Q9UHL4 492 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 AGO1Q9UL18 857 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 NEU3Q9UQ49 428 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ATP8A1Q9Y2Q0 1164 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 PLXNA3P51805 1871 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 BCLAF3A2AJT9 711 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 CFAP69A5D8W1 941 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 RNF103O00237 685 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 STK10O94804 968 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 VAV1P15498 845 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ITIH2P19823 946 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 MX2P20592 715 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 IVDP26440 423 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 OR1E1P30953 314 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 GARSP41250 739 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 DRG2P55039 364 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 XRCC4Q13426 336 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ARHGAP15Q53QZ3 475 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 FAM133BQ5BKY9 247 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 HP1BP3Q5SSJ5 553 aaPredicted RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 ADGRF1Q5T601 910 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 MANEALQ5VSG8 457 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ELMSAN1Q6PJG2 1045 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ARHGEF18Q6ZSZ5 1173 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 HDXQ7Z353 690 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ZNF276Q8N554 614 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ATPAF2Q8N5M1 289 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 RTL3Q8N8U3 475 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 ST13P5Q8NFI4 369 aaPredicted RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 USP33Q8TEY7 942 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 AGAP3Q96P47 875 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 PRKD2Q9BZL6 878 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 SLC39A8Q9C0K1 460 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 PRDM16Q9HAZ2 1276 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 RAB6BQ9NRW1 208 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ZDHHC18Q9NUE0 388 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 TMEM51Q9NW97 253 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 WHRNQ9P202 907 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 CDH22Q9UJ99 828 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 TPX2Q9ULW0 747 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 CCL26Q9Y258 94 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 MRPS23Q9Y3D9 190 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 SH3BP1Q9Y3L3 701 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ZFP37Q9Y6Q3 630 aaPredicted RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 GBF1Q92538 1859 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 E7EVH7 732 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 NCAM2O15394 837 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 SASH3O75995 380 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 NEBLO76041 1014 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 JCHAINP01591 159 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 APRTP07741 180 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 HNRNPA1P09651 372 aaKnown RBP eCLIP3.8□□□□□ -1.83e-6■□□□□ 10.5
RTN4-208ENST00000404909 CHRM1P11229 460 aaPredicted RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 RHOQP17081 205 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 PAPOLAP51003 745 aaKnown RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 SGSHP51688 502 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 CASP8Q14790 479 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 RABGAP1LQ5R372 815 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 LEKR1Q6ZMV7 388 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 TPGS1Q6ZTW0 290 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 PID1Q7Z2X4 250 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 CMTM8Q8IZV2 173 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 UBLCP1Q8WVY7 318 aaPredicted RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 ART4Q93070 314 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 PPP2R3CQ969Q6 453 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 ZFRQ96KR1 1074 aaKnown RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 PRMT1Q99873 361 aaKnown RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 PLK2Q9NYY3 685 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 KLHL8Q9P2G9 620 aaPredicted RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 LSM7Q9UK45 103 aaKnown RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 TCRBV7S3A2A0A539 114 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 HACD1B0YJ81 288 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 DNALI1O14645 258 aaPredicted RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 RAMP2O60895 175 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 HOXC13P31276 330 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 HTR7P34969 479 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 CHKAP35790 457 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 LMAN1P49257 510 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 NRG1Q02297 640 aaPredicted RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 GALNT2Q10471 571 aa3.8□□□□□ -1.8
RTN4-208ENST00000404909 POLD3Q15054 466 aaPredicted RBP3.8□□□□□ -1.8
RTN4-208ENST00000404909 PRKD1Q15139 912 aaPredicted RBP3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms