RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 CCDC117Q8IWD4 279 aaPredicted RBP30.2■■■□□ 2.43
USP42-202ENST00000404008 REXO1L1PQ8IX06 675 aa30.2■■■□□ 2.43
USP42-202ENST00000404008 SYCE1Q8N0S2 351 aa30.2■■■□□ 2.43
USP42-202ENST00000404008 TERB1Q8NA31 727 aa30.2■■■□□ 2.43
USP42-202ENST00000404008 LMLNQ96KR4 655 aa30.2■■■□□ 2.43
USP42-202ENST00000404008 LTB4R2Q9NPC1 389 aa30.2■■■□□ 2.43
USP42-202ENST00000404008 KLHL11Q9NVR0 708 aa30.2■■■□□ 2.43
USP42-202ENST00000404008 CWC15Q9P013 229 aaKnown RBP30.2■■■□□ 2.43
USP42-202ENST00000404008 NDRG2Q9UN36 371 aaKnown RBP30.2■■■□□ 2.43
USP42-202ENST00000404008 MRPS17Q9Y2R5 130 aaKnown RBP30.2■■■□□ 2.43
USP42-202ENST00000404008 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP30.19■■■□□ 2.42
USP42-202ENST00000404008 KAT7O95251 611 aa30.19■■■□□ 2.42
USP42-202ENST00000404008 TNNT1P13805 278 aa30.19■■■□□ 2.42
USP42-202ENST00000404008 GRIA2P42262 883 aa30.19■■■□□ 2.42
USP42-202ENST00000404008 HCAR3P49019 387 aa30.19■■■□□ 2.42
USP42-202ENST00000404008 CDH6P55285 790 aa30.19■■■□□ 2.42
USP42-202ENST00000404008 GRSF1Q12849 480 aaKnown RBP eCLIP30.19■■■□□ 2.42
USP42-202ENST00000404008 ZNF177Q13360 481 aaPredicted RBP30.19■■■□□ 2.42
USP42-202ENST00000404008 RFX8Q6ZV50 586 aa30.19■■■□□ 2.42
USP42-202ENST00000404008 DDX51Q8N8A6 666 aaKnown RBP eCLIP30.19■■■□□ 2.42
USP42-202ENST00000404008 TSC1Q92574 1164 aa30.19■■■□□ 2.42
USP42-202ENST00000404008 FOXQ1Q9C009 403 aa30.19■■■□□ 2.42
USP42-202ENST00000404008 ABCB8Q9NUT2 735 aa30.19■■■□□ 2.42
USP42-202ENST00000404008 TMEM248Q9NWD8 314 aa30.19■■■□□ 2.42
USP42-202ENST00000404008 TBC1D30Q9Y2I9 924 aa30.19■■■□□ 2.42
USP42-202ENST00000404008 A0A0A0MRY4 1105 aa30.18■■■□□ 2.42
USP42-202ENST00000404008 H3BRJ5 948 aa30.18■■■□□ 2.42
USP42-202ENST00000404008 FGF10O15520 208 aaPredicted RBP30.18■■■□□ 2.42
USP42-202ENST00000404008 APODP05090 189 aa30.18■■■□□ 2.42
USP42-202ENST00000404008 CD48P09326 243 aa30.18■■■□□ 2.42
USP42-202ENST00000404008 DRD1P21728 446 aa30.18■■■□□ 2.42
USP42-202ENST00000404008 TARSP26639 723 aaKnown RBP30.18■■■□□ 2.42
USP42-202ENST00000404008 CD70P32970 193 aa30.18■■■□□ 2.42
USP42-202ENST00000404008 KRT81Q14533 505 aa30.18■■■□□ 2.42
USP42-202ENST00000404008 KIAA0907Q7Z7F0 614 aaPredicted RBP30.18■■■□□ 2.42
USP42-202ENST00000404008 NT5DC3Q86UY8 548 aa30.18■■■□□ 2.42
USP42-202ENST00000404008 KCTD6Q8NC69 237 aa30.18■■■□□ 2.42
USP42-202ENST00000404008 EZH1Q92800 747 aaPredicted RBP30.18■■■□□ 2.42
USP42-202ENST00000404008 NELL2Q99435 816 aa30.18■■■□□ 2.42
USP42-202ENST00000404008 EPHX3Q9H6B9 360 aa30.18■■■□□ 2.42
USP42-202ENST00000404008 MTF2Q9Y483 593 aaPredicted RBP30.18■■■□□ 2.42
USP42-202ENST00000404008 PDGFBP01127 241 aaPredicted RBP30.17■■■□□ 2.42
USP42-202ENST00000404008 ARL4AP40617 200 aa30.17■■■□□ 2.42
USP42-202ENST00000404008 LMAN2Q12907 356 aa30.17■■■□□ 2.42
USP42-202ENST00000404008 CCINQ13939 588 aa30.17■■■□□ 2.42
USP42-202ENST00000404008 DPYSL3Q14195 570 aa30.17■■■□□ 2.42
USP42-202ENST00000404008 UBXN2BQ14CS0 331 aa30.17■■■□□ 2.42
USP42-202ENST00000404008 PDK2Q15119 407 aa30.17■■■□□ 2.42
USP42-202ENST00000404008 GEN1Q17RS7 908 aa30.17■■■□□ 2.42
USP42-202ENST00000404008 ANKS1BQ7Z6G8 1248 aa30.17■■■□□ 2.42
USP42-202ENST00000404008 SFTPA1Q8IWL2 248 aa30.17■■■□□ 2.42
USP42-202ENST00000404008 MFSD1Q9H3U5 465 aa30.17■■■□□ 2.42
USP42-202ENST00000404008 CATSPERBQ9H7T0 1116 aa30.17■■■□□ 2.42
USP42-202ENST00000404008 DDX56Q9NY93 547 aaKnown RBP30.17■■■□□ 2.42
USP42-202ENST00000404008 KIAA1522Q9P206 1035 aaPredicted RBP30.17■■■□□ 2.42
USP42-202ENST00000404008 RCOR3Q9P2K3 495 aaPredicted RBP30.17■■■□□ 2.42
USP42-202ENST00000404008 GGA2Q9UJY4 613 aa30.17■■■□□ 2.42
USP42-202ENST00000404008 CHD5Q8TDI0 1954 aa30.17■■■□□ 2.42
USP42-202ENST00000404008 EGFP01133 1207 aa30.16■■■□□ 2.42
USP42-202ENST00000404008 OR1E1P30953 314 aa30.16■■■□□ 2.42
USP42-202ENST00000404008 CTNNA1P35221 906 aaKnown RBP30.16■■■□□ 2.42
USP42-202ENST00000404008 DPYSQ14117 519 aa30.16■■■□□ 2.42
USP42-202ENST00000404008 ZFYVE27Q5T4F4 411 aa30.16■■■□□ 2.42
USP42-202ENST00000404008 PEX26Q7Z412 305 aa30.16■■■□□ 2.42
USP42-202ENST00000404008 SETD3Q86TU7 594 aaPredicted RBP30.16■■■□□ 2.42
USP42-202ENST00000404008 RTL3Q8N8U3 475 aaKnown RBP30.16■■■□□ 2.42
USP42-202ENST00000404008 PJA1Q8NG27 643 aa30.16■■■□□ 2.42
USP42-202ENST00000404008 OR52K2Q8NGK3 314 aa30.16■■■□□ 2.42
USP42-202ENST00000404008 RAPGEF5Q92565 580 aa30.16■■■□□ 2.42
USP42-202ENST00000404008 CSPG4P5Q96PW8 444 aa30.16■■■□□ 2.42
USP42-202ENST00000404008 TRMT1Q9NXH9 659 aaKnown RBP30.16■■■□□ 2.42
USP42-202ENST00000404008 AMFRQ9UKV5 643 aa30.16■■■□□ 2.42
USP42-202ENST00000404008 WASH4PA8MWX3 477 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 STK25O00506 426 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 FTCDO95954 541 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 PABPC1P11940 636 aaKnown RBP30.15■■■□□ 2.42
USP42-202ENST00000404008 KDELR1P24390 212 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 IL4RP24394 825 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 MARCKSL1P49006 195 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 MAPKAPK2P49137 400 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 OXCT1P55809 520 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 C6orf118Q5T5N4 469 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 MAP7D3Q8IWC1 876 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 FLCNQ8NFG4 579 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 KRT35Q92764 455 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 CALN1Q9BXU9 219 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 OSBPL6Q9BZF3 934 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 NDFIP2Q9NV92 336 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 SBDSQ9Y3A5 250 aaKnown RBP eCLIP30.15■■■□□ 2.42
USP42-202ENST00000404008 PCDHA3Q9Y5H8 950 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 TBC1D3BA6NDS4 549 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 FAM170BA6NMN3 283 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 PRRT4C9JH25 899 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 K7EQS6 105 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 DAPK3O43293 454 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 KRT1P04264 644 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 CHRNB1P11230 501 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 CTNNA2P26232 953 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 TNFRSF4P43489 277 aa30.15■■■□□ 2.42
USP42-202ENST00000404008 SLC12A1Q13621 1099 aa30.15■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms