RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 MID1IP1Q9NPA3 183 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 SLC9A8Q9Y2E8 581 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 CAB39Q9Y376 341 aaPredicted RBP11.57□□□□□ -0.56
TTC28-201ENST00000397906 PEX10O60683 326 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 WASP42768 502 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 ATAD3BQ5T9A4 648 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 ZCCHC8Q6NZY4 707 aaKnown RBP11.57□□□□□ -0.56
TTC28-201ENST00000397906 TMPRSS4Q9NRS4 437 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 WHRNQ9P202 907 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 SMIM22K7EJ46 135 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 NPR3P17342 541 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 HNF4AP41235 474 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 FAM120BQ96EK7 910 aaKnown RBP11.57□□□□□ -0.56
TTC28-201ENST00000397906 SYT17Q9BSW7 474 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 DPY30Q9C005 99 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 ARMC7Q9H6L4 198 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 ATP6V1HQ9UI12 483 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 OPLAHO14841 1288 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 BMP10O95393 424 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 MTA1Q13330 715 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 KBTBD12Q3ZCT8 623 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 RIPOR1Q6ZS17 1223 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 POMKQ9H5K3 350 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 NCKIPSDQ9NZQ3 722 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 PCDHB9Q9Y5E1 797 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 REREQ9P2R6 1566 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 KCNA10Q16322 511 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 RNF44Q7L0R7 432 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 OR6K2Q8NGY2 324 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 THAP11Q96EK4 314 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 OSBPL6Q9BZF3 934 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 FAM153AQ9UHL3 310 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 PIK3CDO00329 1044 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 MAPTP10636 758 aaKnown RBP11.57□□□□□ -0.56
TTC28-201ENST00000397906 LSP1P33241 339 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 KCNT2Q6UVM3 1135 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 ZBTB10Q96DT7 871 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 EVA1BQ9NVM1 165 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 RAD54BQ9Y620 910 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 GABRR2P28476 465 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 FAM183BPQ6ZVS7 135 aa11.57□□□□□ -0.56
TTC28-201ENST00000397906 NDRG2Q9UN36 371 aaKnown RBP11.57□□□□□ -0.56
TTC28-201ENST00000397906 ITGA9Q13797 1035 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 SLC22A9Q8IVM8 553 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 C12orf29Q8N999 325 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 ENGASEQ8NFI3 743 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 CES2O00748 559 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 EIF3HO15372 352 aaKnown RBP eCLIP11.56□□□□□ -0.566e-7■■■■■ 28.1
TTC28-201ENST00000397906 CPA3P15088 417 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 CTPS1P17812 591 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 MIPP30301 263 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 SEC13P55735 322 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 MAP4K3Q8IVH8 894 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 WDR18Q9BV38 432 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 CDHR5Q9HBB8 845 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 KLHL20Q9Y2M5 609 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 N4BP2L1Q5TBK1 243 aaPredicted RBP11.56□□□□□ -0.56
TTC28-201ENST00000397906 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.56□□□□□ -0.56
TTC28-201ENST00000397906 GFM2Q969S9 779 aaKnown RBP11.56□□□□□ -0.56
TTC28-201ENST00000397906 NXF3Q9H4D5 531 aaKnown RBP11.56□□□□□ -0.56
TTC28-201ENST00000397906 ASB8Q9H765 288 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 SEMA4BQ9NPR2 832 aaPredicted RBP11.56□□□□□ -0.56
TTC28-201ENST00000397906 HEY2Q9UBP5 337 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 F8VP50 259 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 INPP4BO15327 924 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 HSMCR30P0CW71 290 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 SPIDRQ14159 915 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 IL31RAQ8NI17 732 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 LENG9Q96B70 501 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 CAPNS2Q96L46 248 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 OLFM3Q96PB7 478 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 ACP6Q9NPH0 428 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 RRN3Q9NYV6 651 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 APOA1P02647 267 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 ELK3P41970 407 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 VAC14Q08AM6 782 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 TRIM32Q13049 653 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 ZNF655Q8N720 491 aaPredicted RBP11.56□□□□□ -0.56
TTC28-201ENST00000397906 CCDC134Q9H6E4 229 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 SEPT3Q9UH03 358 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 KRT6AP02538 564 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 KRT6BP04259 564 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 PIRTP0C851 137 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 KRT6CP48668 564 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 MRPS15P82914 257 aaKnown RBP11.56□□□□□ -0.56
TTC28-201ENST00000397906 GALNT3Q14435 633 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 CRYMQ14894 314 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 TTC33Q6PID6 262 aaPredicted RBP11.56□□□□□ -0.56
TTC28-201ENST00000397906 CNSTQ6PJW8 725 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 SLC26A11Q86WA9 606 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 PLK2Q9NYY3 685 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 ZNF839A8K0R7 811 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 TMEM114B3SHH9 223 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 GLUD1P00367 558 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 CLTBP09497 229 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 PSMA3P25788 255 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 ZNF268Q14587 947 aaPredicted RBP11.56□□□□□ -0.56
TTC28-201ENST00000397906 PDPK2PQ6A1A2 396 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 MILR1Q7Z6M3 343 aa11.56□□□□□ -0.56
TTC28-201ENST00000397906 CFAP52Q8N1V2 620 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms