RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CHI3L2Q15782 390 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 ARL13BQ3SXY8 428 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 UBXN11Q5T124 520 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 TRMT10BQ6PF06 316 aaKnown RBP9.89□□□□□ -0.83
COL6A3-204ENST00000392003 DSTYKQ6XUX3 929 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 MPP5Q8N3R9 675 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 SLC7A14Q8TBB6 771 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 TMEM40Q8WWA1 233 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 NDRG1Q92597 394 aaKnown RBP9.89□□□□□ -0.83
COL6A3-204ENST00000392003 MCUR1Q96AQ8 359 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 CDY2AQ9Y6F7 541 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 CCDC195A0A1B0GUA6 201 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 DIAPH2O60879 1101 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 MYL2P10916 166 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 NFKBIAP25963 317 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 THPOP40225 353 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 MAGEA3P43357 314 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 MAP3K7CLP57077 242 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 PURAQ00577 322 aaKnown RBP9.89□□□□□ -0.83
COL6A3-204ENST00000392003 BLMHQ13867 455 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 RCN1Q15293 331 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 XKR4Q5GH76 650 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 LRRC8BQ6P9F7 803 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 RNF168Q8IYW5 571 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-204ENST00000392003 ZNF276Q8N554 614 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 P2RY11Q96G91 374 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 XPNPEP3Q9NQH7 507 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 KRT82Q9NSB4 513 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 DDX43Q9NXZ2 648 aaKnown RBP9.89□□□□□ -0.83
COL6A3-204ENST00000392003 UGT1A9O60656 530 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 MGAT1P26572 445 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 SERPINB3P29508 390 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 CCNFP41002 786 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 GRIA1P42261 906 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 LHX1P48742 406 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 TPI1P60174 286 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 MRPS6P82932 125 aaKnown RBP9.88□□□□□ -0.83
COL6A3-204ENST00000392003 STX3Q13277 289 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 SH2D5Q6ZV89 423 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 ARHGAP24Q8N264 748 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 KCTD13Q8WZ19 329 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 NPY6RQ99463 290 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 WWP1Q9H0M0 922 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 PRDM12Q9H4Q4 367 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 UGT1A7Q9HAW7 530 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 UGT1A10Q9HAW8 530 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 UGT1A8Q9HAW9 530 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 EIF2B3Q9NR50 452 aaKnown RBP9.88□□□□□ -0.83
COL6A3-204ENST00000392003 SMYD2Q9NRG4 433 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 GJD2Q9UKL4 321 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 Q9Y3F1 56 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 GYG2O15488 501 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 RFPL1O75677 317 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 IL1BP01584 269 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 VAV1P15498 845 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 PGAM1P18669 254 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 EPHB2P29323 1055 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 LRPAP1P30533 357 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 CRHR1P34998 444 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 HOXD12P35452 270 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 BST1Q10588 318 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 NAB1Q13506 487 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 MAP7D1Q3KQU3 841 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 CYS1Q717R9 158 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 STKLD1Q8NE28 680 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 RAB3IL1Q8TBN0 382 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 SENP8Q96LD8 212 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 OLFM3Q96PB7 478 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 SYT15Q9BQS2 421 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 ULBP1Q9BZM6 244 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 ARHGAP39Q9C0H5 1083 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 GTF2IRD1Q9UHL9 959 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 MFHAS1Q9Y4C4 1052 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 TRIM43BA6NCK2 446 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 POLBP06746 335 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 GLUD2P49448 558 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 IRX4P78413 519 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 MXRA7P84157 204 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 PLEKHG4Q58EX7 1191 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 RNF220Q5VTB9 566 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 CDHR3Q6ZTQ4 885 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 RFX8Q6ZV50 586 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 ZNF534Q76KX8 674 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 TMEM86AQ8N2M4 240 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 SMG8Q8ND04 991 aaKnown RBP9.88□□□□□ -0.83
COL6A3-204ENST00000392003 SMC1BQ8NDV3 1235 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 ACMSDQ8TDX5 336 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 SNRNP27Q8WVK2 155 aaKnown RBP9.88□□□□□ -0.83
COL6A3-204ENST00000392003 ZFP42Q96MM3 310 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 C7orf26Q96N11 449 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 RILPQ96NA2 401 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 EBF2Q9HAK2 575 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 KCNK4Q9NYG8 393 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 ST3GAL5Q9UNP4 418 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 INPP5FQ9Y2H2 1132 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 TRPV2Q9Y5S1 764 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 NR2E3Q9Y5X4 410 aa9.88□□□□□ -0.83
COL6A3-204ENST00000392003 SF3B1O75533 1304 aaKnown RBP eCLIP9.88□□□□□ -0.83
COL6A3-204ENST00000392003 MYADML2A6NDP7 307 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 HAS3O00219 553 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms