RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 FGF19O95750 216 aa27.57■■■□□ 2
MSX1-201ENST00000382723 RHOQP17081 205 aa27.57■■■□□ 2
MSX1-201ENST00000382723 PRKD1Q15139 912 aaPredicted RBP27.57■■■□□ 2
MSX1-201ENST00000382723 TEAD2Q15562 447 aa27.57■■■□□ 2
MSX1-201ENST00000382723 SLC5A9Q2M3M2 681 aa27.57■■■□□ 2
MSX1-201ENST00000382723 GPR158Q5T848 1215 aa27.57■■■□□ 2
MSX1-201ENST00000382723 NLRP14Q86W24 1093 aa27.57■■■□□ 2
MSX1-201ENST00000382723 ADAMTS19Q8TE59 1207 aa27.57■■■□□ 2
MSX1-201ENST00000382723 HTR3CQ8WXA8 447 aa27.57■■■□□ 2
MSX1-201ENST00000382723 ART4Q93070 314 aa27.57■■■□□ 2
MSX1-201ENST00000382723 IGFLR1Q9H665 355 aa27.57■■■□□ 2
MSX1-201ENST00000382723 SEPT10Q9P0V9 454 aa27.57■■■□□ 2
MSX1-201ENST00000382723 ANAPC5Q9UJX4 755 aa27.57■■■□□ 2
MSX1-201ENST00000382723 DRGXA6NNA5 263 aa27.56■■■□□ 2
MSX1-201ENST00000382723 EMBQ6PCB8 327 aa27.56■■■□□ 2
MSX1-201ENST00000382723 CFAP52Q8N1V2 620 aa27.56■■■□□ 2
MSX1-201ENST00000382723 DEPDC1BQ8WUY9 529 aa27.56■■■□□ 2
MSX1-201ENST00000382723 ZNF707Q96C28 371 aaPredicted RBP27.56■■■□□ 2
MSX1-201ENST00000382723 LRRC45Q96CN5 670 aa27.56■■■□□ 2
MSX1-201ENST00000382723 FMO2Q99518 471 aa27.56■■■□□ 2
MSX1-201ENST00000382723 SMG9Q9H0W8 520 aaKnown RBP27.56■■■□□ 2
MSX1-201ENST00000382723 CLUHO75153 1309 aa27.56■■■□□ 2
MSX1-201ENST00000382723 NCAM2O15394 837 aa27.55■■■□□ 2
MSX1-201ENST00000382723 MX2P20592 715 aa27.55■■■□□ 2
MSX1-201ENST00000382723 ACTN2P35609 894 aa27.55■■■□□ 2
MSX1-201ENST00000382723 GALNT2Q10471 571 aa27.55■■■□□ 2
MSX1-201ENST00000382723 CHRDL2Q6WN34 429 aa27.55■■■□□ 2
MSX1-201ENST00000382723 LZTR1Q8N653 840 aa27.55■■■□□ 2
MSX1-201ENST00000382723 VN1R2Q8NFZ6 395 aa27.55■■■□□ 2
MSX1-201ENST00000382723 CCDC110Q8TBZ0 833 aa27.55■■■□□ 2
MSX1-201ENST00000382723 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP27.55■■■□□ 2
MSX1-201ENST00000382723 AZIN2Q96A70 460 aa27.55■■■□□ 2
MSX1-201ENST00000382723 MRPL38Q96DV4 380 aaKnown RBP27.55■■■□□ 2
MSX1-201ENST00000382723 RTP4Q96DX8 246 aa27.55■■■□□ 2
MSX1-201ENST00000382723 PIDD1Q9HB75 910 aa27.55■■■□□ 2
MSX1-201ENST00000382723 WASH4PA8MWX3 477 aa27.55■■■□□ 2
MSX1-201ENST00000382723 TP73O15350 636 aa27.55■■■□□ 2
MSX1-201ENST00000382723 MOSPD3O75425 235 aa27.55■■■□□ 2
MSX1-201ENST00000382723 SLC7A9P82251 487 aa27.55■■■□□ 2
MSX1-201ENST00000382723 ARHGAP12Q8IWW6 846 aa27.55■■■□□ 2
MSX1-201ENST00000382723 P2RY11Q96G91 374 aa27.55■■■□□ 2
MSX1-201ENST00000382723 TMEM248Q9NWD8 314 aa27.55■■■□□ 2
MSX1-201ENST00000382723 OBSL1O75147 1896 aa27.54■■■□□ 2
MSX1-201ENST00000382723 DNALI1O14645 258 aaPredicted RBP27.54■■■□□ 2
MSX1-201ENST00000382723 GARSP41250 739 aaKnown RBP27.54■■■□□ 2
MSX1-201ENST00000382723 ARHGAP15Q53QZ3 475 aa27.54■■■□□ 2
MSX1-201ENST00000382723 ADGRF1Q5T601 910 aa27.54■■■□□ 2
MSX1-201ENST00000382723 TMC5Q6UXY8 1006 aa27.54■■■□□ 2
MSX1-201ENST00000382723 BBOF1Q8ND07 529 aa27.54■■■□□ 2
MSX1-201ENST00000382723 SLC39A8Q9C0K1 460 aa27.54■■■□□ 2
MSX1-201ENST00000382723 ADAM7Q9H2U9 754 aa27.54■■■□□ 2
MSX1-201ENST00000382723 TPX2Q9ULW0 747 aaKnown RBP27.54■■■□□ 2
MSX1-201ENST00000382723 TRANK1O15050 2925 aa27.53■■■□□ 2
MSX1-201ENST00000382723 TSPAN3O60637 253 aa27.53■■■□□ 2
MSX1-201ENST00000382723 LEMD2Q8NC56 503 aa27.53■■■□□ 2
MSX1-201ENST00000382723 SMG7Q92540 1137 aaKnown RBP27.53■■■□□ 2
MSX1-201ENST00000382723 CAVIN3Q969G5 261 aa27.53■■■□□ 2
MSX1-201ENST00000382723 CEP41Q9BYV8 373 aa27.53■■■□□ 2
MSX1-201ENST00000382723 CFAP97Q9P2B7 532 aa27.53■■■□□ 2
MSX1-201ENST00000382723 ZFP37Q9Y6Q3 630 aaPredicted RBP27.53■■■□□ 2
MSX1-201ENST00000382723 PPIDQ08752 370 aaKnown RBP27.53■■■□□ 2
MSX1-201ENST00000382723 ARHGAP36Q6ZRI8 547 aa27.53■■■□□ 2
MSX1-201ENST00000382723 HDAC11Q96DB2 347 aa27.53■■■□□ 2
MSX1-201ENST00000382723 FERMT1Q9BQL6 677 aa27.53■■■□□ 2
MSX1-201ENST00000382723 PAK5Q9P286 719 aa27.53■■■□□ 2
MSX1-201ENST00000382723 MTRF1LQ9UGC7 380 aaKnown RBP27.53■■■□□ 2
MSX1-201ENST00000382723 TNRC18O15417 2968 aaPredicted RBP27.53■■■□□ 2
MSX1-201ENST00000382723 KCNK1O00180 336 aa27.52■■■□□ 2
MSX1-201ENST00000382723 BASP1P80723 227 aaKnown RBP27.52■■■□□ 2
MSX1-201ENST00000382723 PRICKLE1Q96MT3 831 aaPredicted RBP27.52■■■□□ 2
MSX1-201ENST00000382723 LSM7Q9UK45 103 aaKnown RBP27.52■■■□□ 2
MSX1-201ENST00000382723 RNF103O00237 685 aa27.51■■■□□ 2
MSX1-201ENST00000382723 GREM1O60565 184 aa27.51■■■□□ 2
MSX1-201ENST00000382723 AVPR1AP37288 418 aa27.51■■■□□ 2
MSX1-201ENST00000382723 RPS24P62847 133 aaKnown RBP27.51■■■□□ 2
MSX1-201ENST00000382723 PRSS36Q5K4E3 855 aa27.51■■■□□ 2
MSX1-201ENST00000382723 RABGAP1LQ5R372 815 aa27.51■■■□□ 2
MSX1-201ENST00000382723 HIBCHQ6NVY1 386 aaPredicted RBP27.51■■■□□ 2
MSX1-201ENST00000382723 CMTM8Q8IZV2 173 aa27.51■■■□□ 2
MSX1-201ENST00000382723 ATPAF2Q8N5M1 289 aa27.51■■■□□ 2
MSX1-201ENST00000382723 ING5Q8WYH8 240 aa27.51■■■□□ 2
MSX1-201ENST00000382723 DDX50Q9BQ39 737 aaKnown RBP27.51■■■□□ 2
MSX1-201ENST00000382723 BRD8Q9H0E9 1235 aa27.51■■■□□ 2
MSX1-201ENST00000382723 TASP1Q9H6P5 420 aa27.51■■■□□ 2
MSX1-201ENST00000382723 NOL6Q9H6R4 1146 aaKnown RBP27.51■■■□□ 2
MSX1-201ENST00000382723 SH3BP1Q9Y3L3 701 aa27.51■■■□□ 2
MSX1-201ENST00000382723 ATG2AQ2TAZ0 1938 aa27.51■■□□□ 1.99
MSX1-201ENST00000382723 C5orf60A6NFR6 353 aa27.51■■□□□ 1.99
MSX1-201ENST00000382723 GCATO75600 419 aa27.51■■□□□ 1.99
MSX1-201ENST00000382723 STK10O94804 968 aaKnown RBP27.51■■□□□ 1.99
MSX1-201ENST00000382723 PFKLP17858 780 aa27.51■■□□□ 1.99
MSX1-201ENST00000382723 DDX6P26196 483 aaKnown RBP eCLIP27.51■■□□□ 1.99
MSX1-201ENST00000382723 SGSHP51688 502 aa27.51■■□□□ 1.99
MSX1-201ENST00000382723 AFMIDQ63HM1 303 aa27.51■■□□□ 1.99
MSX1-201ENST00000382723 PPP2R3CQ969Q6 453 aa27.51■■□□□ 1.99
MSX1-201ENST00000382723 CDCA3Q99618 268 aaPredicted RBP27.51■■□□□ 1.99
MSX1-201ENST00000382723 DONSONQ9NYP3 566 aa27.51■■□□□ 1.99
MSX1-201ENST00000382723 LEFTY2O00292 366 aa27.5■■□□□ 1.99
MSX1-201ENST00000382723 POU2F2P09086 479 aa27.5■■□□□ 1.99
MSX1-201ENST00000382723 OR1E1P30953 314 aa27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms