RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 LUZP2Q86TE4 346 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 STK32CQ86UX6 486 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 MAGED4Q96JG8 741 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 INPP4AQ96PE3 977 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 ASB2Q96Q27 587 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 PIF1Q9H611 641 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 CASTOR2A6NHX0 329 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 TISP43B9A030 160 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 CHI3L1P36222 383 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-203ENST00000372407 PARP6Q2NL67 630 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 CYP4Z1Q86W10 505 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 OOSP2Q86WS3 158 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 CARNMT1Q8N4J0 409 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 DHRSXQ8N5I4 330 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 FNDC5Q8NAU1 212 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 ZNF398Q8TD17 642 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 HASPINQ8TF76 798 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 YIPF2Q9BWQ6 316 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 KLHL25Q9H0H3 589 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 DYRK1BQ9Y463 629 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 ZNF7P17097 686 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-203ENST00000372407 RPA3P35244 121 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-203ENST00000372407 NAGLUP54802 743 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 TBX4P57082 545 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 GTF2BQ00403 316 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 C1DQ13901 141 aaKnown RBP11.65□□□□□ -0.54
PTPRF-203ENST00000372407 GRIK4Q16099 956 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 SDE2Q6IQ49 451 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 ARMC6Q6NXE6 501 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 TFAP2DQ7Z6R9 452 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 ZCCHC7Q8N3Z6 543 aaKnown RBP11.65□□□□□ -0.54
PTPRF-203ENST00000372407 MKL1Q969V6 931 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 SERPINB11Q96P15 392 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 PRRG3Q9BZD7 231 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 MYRFQ9Y2G1 1151 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 LMO7Q8WWI1 1683 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 ASTN2O75129 1339 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-203ENST00000372407 CNTNAP2Q9UHC6 1331 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 RAD51BO15315 384 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 USP12O75317 370 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 PSMD10O75832 226 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 MYBL2P10244 700 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 ETS1P14921 441 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 TCF3P15923 654 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 PSMB9P28065 219 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 ALDH6A1Q02252 535 aaKnown RBP11.65□□□□□ -0.54
PTPRF-203ENST00000372407 MTA1Q13330 715 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 XRCC4Q13426 336 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 TRIP4Q15650 581 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-203ENST00000372407 ARMCX4Q5H9R4 360 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 ARHGAP17Q68EM7 881 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 DUPD1Q68J44 220 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 NEPROQ6NW34 567 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 FOXR2Q6PJQ5 311 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 CRELD2Q6UXH1 353 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-203ENST00000372407 OR56A4Q8NGH8 313 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 ATXN3LQ9H3M9 355 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 VTA1Q9NP79 307 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 ACP6Q9NPH0 428 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 TLR8Q9NR97 1041 aaKnown RBP11.65□□□□□ -0.54
PTPRF-203ENST00000372407 RABGEF1Q9UJ41 708 aa11.65□□□□□ -0.54
PTPRF-203ENST00000372407 LINC00854A0A1B0GVQ3 168 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 MANSC4A6NHS7 340 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-203ENST00000372407 MEI4A8MW99 385 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 CHADO15335 359 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 CYP1A2P05177 515 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 ABHD2P08910 425 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 GSTM1P09488 218 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 PSMA3P25788 255 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 CAPZA2P47755 286 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 NUMBP49757 651 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 MAMLD1Q13495 774 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 FRG1Q14331 258 aaKnown RBP11.64□□□□□ -0.55
PTPRF-203ENST00000372407 CEP78Q5JTW2 689 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 SCARA3Q6AZY7 606 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 AADACL2Q6P093 401 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 C16orf46Q6P387 395 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 DLG3Q92796 817 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 SMARCD1Q96GM5 515 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 SPACA6W5XKT8 324 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 GAKO14976 1311 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 A0A087WXM4 84 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 ZNF862O60290 1169 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 PSMG1O95456 288 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 LTFP02788 710 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 SHBGP04278 402 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 TKTP29401 623 aaKnown RBP11.64□□□□□ -0.55
PTPRF-203ENST00000372407 OR1E1P30953 314 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 PLK1P53350 603 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 FCGRTP55899 365 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 DLG4P78352 724 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 FKBP1CQ5VVH2 108 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 NAIF1Q69YI7 327 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-203ENST00000372407 CYP2R1Q6VVX0 501 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 NECAB2Q7Z6G3 386 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 C11orf74Q86VG3 221 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 EID3Q8N140 333 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 PCSK9Q8NBP7 692 aaKnown RBP11.64□□□□□ -0.55
PTPRF-203ENST00000372407 LPCAT1Q8NF37 534 aa11.64□□□□□ -0.55
PTPRF-203ENST00000372407 TRAPPC12Q8WVT3 735 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms